Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq43 95.1 8e-15 >seq43 Length=605699 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | |||||||| |||||| || || || || |||| ||| || || Sbjct 450661 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGG 450720 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| ||||| || || || ||||| || | |||||| ||||| || || | |||||| Sbjct 450721 CCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCC 450780 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | || ||| | ||| |||||| || ||||| | || Sbjct 450781 TTGTCT-TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGT 450839 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || ||||||||||| Sbjct 450840 AATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG-- 34537 || || | ||||||||||||||| || | || |||||| |||||||| || || | Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||||| || | || ||||| || || || ||||| || | |||||| ||||| || | Sbjct 450484 AAAGTG--CGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTG 450541 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| ||| || | || ||| | ||| |||||| ||| Sbjct 450542 GAATACCTTCCTTGTCT-TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCT 450600 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || || || | || || || ||||| ||||| Sbjct 450601 ACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729431226252