Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq43 113 4e-20 >seq43 Length=605699 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || |||||||| || ||| | || || || || || || | || Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| ||||| || ||||| || || Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | || || || || | |||| |||||| Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || || || ||||| |||||| | || || || Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGG 450424 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | ||||| || ||||| ||| | || Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| || ||||| ||||| || || Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || | || ||| | || || | || ||||| Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| | || ||||| || Sbjct 450698 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCCGCGGTGGTAT 450649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918160794880