Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq43 156 1e-32 seq40 143 6e-29 >seq43 Length=605699 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || |||||||||||||| || || || |||| ||||| || |||||||| Sbjct 450886 CGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTG 450945 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| ||||| || || || || || ||||| || || |||||| Sbjct 450946 CGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCT 451005 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| || ||||||||||| | || || || | Sbjct 451006 TCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGT 451065 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || ||||| || || | ||| | |||||| Sbjct 451066 GTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || || | ||||| ||||||||||| Sbjct 450429 ACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGT 450488 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| || || || ||||| || |||||||| Sbjct 450489 GCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACC 450548 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || ||||||||||| | || || || | Sbjct 450549 TTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAG 450608 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||| ||| || | ||| | |||||| Sbjct 450609 TGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||||||||| || || || |||| ||||| || || | || Sbjct 451341 ACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGT 451400 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| |||||||| || | || || ||||| || ||||| || Sbjct 451401 GCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCC 451460 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || || || ||| ||| || ||||||||||||| ||| || || | Sbjct 451461 TTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAG 451520 Query 225672 CGTGATCGTCTTGCCCGT 225689 || || |||||||| || Sbjct 451521 GGTAATGGTCTTGCCAGT 451538 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| || || || |||| |||||| || || | || | || || Sbjct 450667 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCC 450726 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || || || || ||||| || ||||| || ||||||||| Sbjct 450727 TCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 450786 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || || ||||||||||| | ||| || || | || || ||| Sbjct 450787 TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTC 450846 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | ||||| Sbjct 450847 TTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || || | |||||| ||||||||||| | ||||| Sbjct 451123 AGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCC 451182 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || || || || || || || ||||| || |||||||| Sbjct 451183 TCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCC 451242 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || ||||||||||| | || || || | ||||| ||| Sbjct 451243 TGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTC 451302 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||| || Sbjct 451303 TTTCCAGTAAGAGTCTT 451319 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/274 (67%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 |||||||| ||| || | |||||| ||||| | |||||||| ||||| ||| Sbjct 33977 TTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCA 33918 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | ||| || ||||||| | ||| || | || || || | ||| | || |||| Sbjct 33917 GTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGTGCCTTGATGGTCTTCATGACCTTG 33858 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || || |||||||||| ||||| | ||||| || | || || | |||| | | Sbjct 33857 CCGGCCTTCTCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATA 33798 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || ||| ||| || ||||| | ||| ||| || |||| ||||| | ||||||| Sbjct 33797 CCAGGACATTCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATG 33738 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAA-AAGT 193772 ||||| |||| |||| | || ||||| |||| Sbjct 33737 AAGAGATCAGGGATCCAGAGAGCATAGAACAAGT 33704 >seq40 Length=667070 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||||||||| || || || |||| ||||| || || | || | || || Sbjct 1489 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 1430 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || || || ||||| ||||| || ||||||||||| Sbjct 1429 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1370 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| ||||| |||||||||| || || || | ||||| ||| Sbjct 1369 TGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTC 1310 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | |||||| Sbjct 1309 TTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530527710536