Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq23 183 3e-41
>seq23
Length=690853
Score = 183 bits (202), Expect = 3e-41
Identities = 564/863 (65%), Gaps = 11/863 (1%)
Strand=Plus/Minus
Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316
|||||||| || || ||||| || ||||| || || ||||| | | ||||| ||
Sbjct 89234 TTTTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTC 89175
Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAG 4375
|||||||| ||||| ||||| | | || || | ||||| | |||| || ||
Sbjct 89174 TCCATAAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCCA-AGAGAGACGAG 89116
Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAATTCCAATTA 4434
| ||| ||||| |||||||| || |||| || |||||| || ||| | | ||||| |
Sbjct 89115 GAGTCGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAA 89056
Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494
|| ||||| | || ||| | || | || || || || ||||| || || |
Sbjct 89055 GGGGCAT-GGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGA 88997
Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554
| |||| || | | || || || || || |||| | |||||| | ||| || |
Sbjct 88996 TGTCTTGTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACAGGCGA 88937
Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614
|||| || | ||| ||||| | || || || || ||| || | ||| ||||
Sbjct 88936 AATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCA 88877
Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674
| | ||| | ||| || |||||||| || | ||| || || ||||| || || || || |
Sbjct 88876 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCT 88817
Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AG-CTGGCTTTGTCTTTAATCCA 4732
| || || ||||| || || | || | || | || || | | |||| ||||||
Sbjct 88816 CGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCG--TCGTCTGCAATCCA 88759
Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792
| |||||||| ||||||| ||| | |||||| ||||| | || || | || |
Sbjct 88758 GCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAG 88699
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| || | | | || | || || || || || || ||| || | || ||
Sbjct 88698 GTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGA 88639
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912
|| || ||||| ||||| || || || ||||||| || |||| |||||| ||
Sbjct 88638 GTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGAC 88579
Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972
|||||| | || | || | || ||||| || || || || |||||||| ||||| ||
Sbjct 88578 TTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGAA 88519
Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC---CAGTGGGG 5029
|| | || || || || ||| | ||||||| || || || ||| |||| | |
Sbjct 88518 AGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTG 88459
Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089
|| || || | | |||| || || | ||||| || || ||||| || ||||||||
Sbjct 88458 CAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTA 88399
Query 5090 CATAGACCAAATATCAGGATACT 5112
||| |||||| || ||||||
Sbjct 88398 CATTTGCCAAATCTCGTGATACT 88376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427049370994652
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |