Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq23 183 3e-41 >seq23 Length=690853 Score = 183 bits (202), Expect = 3e-41 Identities = 564/863 (65%), Gaps = 11/863 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 |||||||| || || ||||| || ||||| || || ||||| | | ||||| || Sbjct 89234 TTTTGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTC 89175 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||||| ||||| ||||| | | || || | ||||| | |||| || || Sbjct 89174 TCCATAAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCCA-AGAGAGACGAG 89116 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTTAATTCCAATTA 4434 | ||| ||||| |||||||| || |||| || |||||| || ||| | | ||||| | Sbjct 89115 GAGTCGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAA 89056 Query 4435 ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 || ||||| | || ||| | || | || || || || ||||| || || | Sbjct 89055 GGGGCAT-GGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGA 88997 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAA 4554 | |||| || | | || || || || || |||| | |||||| | ||| || | Sbjct 88996 TGTCTTGTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACAGGCGA 88937 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCA 4614 |||| || | ||| ||||| | || || || || ||| || | ||| |||| Sbjct 88936 AATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCA 88877 Query 4615 TTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTT 4674 | | ||| | ||| || |||||||| || | ||| || || ||||| || || || || | Sbjct 88876 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCT 88817 Query 4675 CTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AG-CTGGCTTTGTCTTTAATCCA 4732 | || || ||||| || || | || | || | || || | | |||| |||||| Sbjct 88816 CGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCG--TCGTCTGCAATCCA 88759 Query 4733 TTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 | |||||||| ||||||| ||| | |||||| ||||| | || || | || | Sbjct 88758 GCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAG 88699 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | || | | | || | || || || || || || ||| || | || || Sbjct 88698 GTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGA 88639 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || || ||||| ||||| || || || ||||||| || |||| |||||| || Sbjct 88638 GTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGAC 88579 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 |||||| | || | || | || ||||| || || || || |||||||| ||||| || Sbjct 88578 TTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGAA 88519 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC---CAGTGGGG 5029 || | || || || || ||| | ||||||| || || || ||| |||| | | Sbjct 88518 AGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTG 88459 Query 5030 CAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 || || || | | |||| || || | ||||| || || ||||| || |||||||| Sbjct 88458 CAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTA 88399 Query 5090 CATAGACCAAATATCAGGATACT 5112 ||| |||||| || |||||| Sbjct 88398 CATTTGCCAAATCTCGTGATACT 88376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049370994652