Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq43 167 3e-36
>seq43
Length=605699
Score = 167 bits (184), Expect = 3e-36
Identities = 562/868 (65%), Gaps = 14/868 (2%)
Strand=Plus/Minus
Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734
||| || || || || ||||| || || || ||||||| | | || | | ||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794
||||||||| | || || || ||||| || || || || | ||||| ||| ||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854
||| | |||||| || || || || ||| | || || ||| | || | |||| |||||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 77855 TTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCTCTCT---CTT-TCATAT 77909
| ||| | | ||| || || || | | | || ||| | ||| || ||
Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843
Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969
| || || | |||||||||||| || | || || | || ||||| ||||| ||
Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783
Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029
|||||||| | ||||| || |||| |||| || || ||||| ||||||||||| |||
Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723
Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089
|| |||||| || | || || | | ||||| || || ||||| |
Sbjct 33722 CAGAGAGCATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663
Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149
|| || || | | || || | |||||||| || | || || || | | || ||
Sbjct 33662 TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGA 33603
Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209
|| || || || || || || | ||| ||||| ||||| || | || | || ||| ||
Sbjct 33602 CGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGG 33543
Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--AT 78267
|| || ||||| ||||| |||||||| || | ||| ||||| || |||| || || |
Sbjct 33542 ATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAG 33483
Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327
| || || | || || || || || ||||||| || | || || ||| | ||
Sbjct 33482 TGGACATTGAGA--CCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTG 33425
Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387
| |||||||| || || || ||||||| |||| | | ||| || || || | ||
Sbjct 33424 TGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTT 33365
Query 78388 GATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG 78447
| | | || || || || || | || || ||||| || || || || ||
Sbjct 33364 GTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAG 33305
Query 78448 AAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTA 78507
| | || |||||||| ||||| || ||| ||||| |||||| || || || |
Sbjct 33304 ACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGA 33245
Query 78508 CACGCATCAACATATGCTGAGGTCTTTC 78535
||||||| | ||| ||||| ||||| ||
Sbjct 33244 CACGCATGATCATGTGCTGCGGTCTCTC 33217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668417932160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |