Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq43 167 3e-36 >seq43 Length=605699 Score = 167 bits (184), Expect = 3e-36 Identities = 562/868 (65%), Gaps = 14/868 (2%) Strand=Plus/Minus Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734 ||| || || || || ||||| || || || ||||||| | | || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 ||||||||| | || || || ||||| || || || || | ||||| ||| || Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 ||| | |||||| || || || || ||| | || || ||| | || | |||| ||||| Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 77855 TTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCGCCTCTCT---CTT-TCATAT 77909 | ||| | | ||| || || || | | | || ||| | ||| || || Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 77910 TGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTT 77969 | || || | |||||||||||| || | || || | || ||||| ||||| || Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783 Query 77970 GGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATC 78029 |||||||| | ||||| || |||| |||| || || ||||| ||||||||||| ||| Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723 Query 78030 CATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGA 78089 || |||||| || | || || | | ||||| || || ||||| | Sbjct 33722 CAGAGAGCATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663 Query 78090 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGT 78149 || || || | | || || | |||||||| || | || || || | | || || Sbjct 33662 TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGA 33603 Query 78150 CGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGA 78209 || || || || || || || | ||| ||||| ||||| || | || | || ||| || Sbjct 33602 CGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGG 33543 Query 78210 ATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT--AT 78267 || || ||||| ||||| |||||||| || | ||| ||||| || |||| || || | Sbjct 33542 ATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAG 33483 Query 78268 TACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 | || || | || || || || || ||||||| || | || || ||| | || Sbjct 33482 TGGACATTGAGA--CCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTG 33425 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387 | |||||||| || || || ||||||| |||| | | ||| || || || | || Sbjct 33424 TGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTT 33365 Query 78388 GATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG 78447 | | | || || || || || | || || ||||| || || || || || Sbjct 33364 GTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAG 33305 Query 78448 AAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTA 78507 | | || |||||||| ||||| || ||| ||||| |||||| || || || | Sbjct 33304 ACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGA 33245 Query 78508 CACGCATCAACATATGCTGAGGTCTTTC 78535 ||||||| | ||| ||||| ||||| || Sbjct 33244 CACGCATGATCATGTGCTGCGGTCTCTC 33217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668417932160