Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq43 208 1e-48
seq23 116 5e-21
>seq43
Length=605699
Score = 208 bits (230), Expect = 1e-48
Identities = 418/618 (68%), Gaps = 4/618 (1%)
Strand=Plus/Minus
Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578
|||||||||||| || | || || | || |||||||||||| || || ||||| | ||
Sbjct 33828 TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGA 33769
Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638
|||||| |||| |||| || || ||||| ||||||||||| ||||| |||||| ||
Sbjct 33768 CCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAA 33709
Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698
| || || | | ||||| || || ||||| | || ||||| | |
Sbjct 33708 CAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649
Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758
|| || | |||||||| || | || || || | |||| || || || || || ||
Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589
Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818
|| || | ||| ||||||||||| || | || | || ||| || || |||||||| ||
Sbjct 33588 TTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGA 33529
Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGG 76876
|||||||||||| || | ||| ||||| || |||||| || | | || | ||
Sbjct 33528 TGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTG--AGA 33471
Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936
|| || || || || | |||||||| | ||||| ||| | |||||| ||||||||
Sbjct 33470 CCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCA 33411
Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996
|| || |||||| |||| | | ||| || || || | ||| | | ||
Sbjct 33410 TCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTA 33351
Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056
|| || || || | ||||| ||||| || ||||| || ||| | || ||||||
Sbjct 33350 CCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTAT 33291
Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116
|| ||||| | ||| || || |||||| || |||||||||||||| | |||
Sbjct 33290 GTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATCATG 33231
Query 77117 TGCTGAGGTCGTTCTACA 77134
||||| |||| ||| ||
Sbjct 33230 TGCTGCGGTCTCTCTGCA 33213
>seq23
Length=690853
Score = 116 bits (128), Expect = 5e-21
Identities = 347/531 (65%), Gaps = 12/531 (2%)
Strand=Plus/Minus
Query 46680 AAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCC 46739
||| ||||| || ||||| || |||||||| ||||||||||| || | ||||| || ||
Sbjct 88893 AAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCC 88834
Query 46740 AGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC 46799
||| || || || || || ||||| || || || ||||| | | | | | | | ||
Sbjct 88833 AGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTC 88774
Query 46800 AT--TATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856
| | || |||||| | | ||||| || || |||| ||| | || || ||||| ||
Sbjct 88773 GTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTC 88714
Query 46857 TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916
|| |||| ||||| | || | | || || | |||||||| || | ||
Sbjct 88713 GATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAG 88654
Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCC---ATCTGAAATCCGTAAAAACATCT 46973
|| | ||||| || |||||||| ||| ||||| || || || || ||||
Sbjct 88653 GGAGTAGGTCTCTGAGTGGATGTTTTC---CGCCATGATCTGGAAGCCATAGAAGCATCG 88597
Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033
||| || | | || || || | | || || || |||||| ||||| || || ||
Sbjct 88596 TGCCTCTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCC 88537
Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093
|||||| || ||||| || || | || || || || | ||| ||| | ||
Sbjct 88536 ATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAG 88477
Query 47094 TTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGA 47150
|| || |||||| | | || || || | || | || || || |||||||| ||
Sbjct 88476 CTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGA 88417
Query 47151 CGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201
|| ||||| ||||| ||||| | ||| || || |||| | ||| || ||
Sbjct 88416 TGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712934007886080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |