Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq43 208 1e-48 seq23 116 5e-21 >seq43 Length=605699 Score = 208 bits (230), Expect = 1e-48 Identities = 418/618 (68%), Gaps = 4/618 (1%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||||||| || | || || | || |||||||||||| || || ||||| | || Sbjct 33828 TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGA 33769 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 |||||| |||| |||| || || ||||| ||||||||||| ||||| |||||| || Sbjct 33768 CCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAA 33709 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 | || || | | ||||| || || ||||| | || ||||| | | Sbjct 33708 CAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 || || | |||||||| || | || || || | |||| || || || || || || Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 || || | ||| ||||||||||| || | || | || ||| || || |||||||| || Sbjct 33588 TTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGA 33529 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAAT--ATTACTAATAGATAGG 76876 |||||||||||| || | ||| ||||| || |||||| || | | || | || Sbjct 33528 TGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTG--AGA 33471 Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || || || | |||||||| | ||||| ||| | |||||| |||||||| Sbjct 33470 CCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCA 33411 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 || || |||||| |||| | | ||| || || || | ||| | | || Sbjct 33410 TCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTA 33351 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || || || || | ||||| ||||| || ||||| || ||| | || |||||| Sbjct 33350 CCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTAT 33291 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 || ||||| | ||| || || |||||| || |||||||||||||| | ||| Sbjct 33290 GTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATCATG 33231 Query 77117 TGCTGAGGTCGTTCTACA 77134 ||||| |||| ||| || Sbjct 33230 TGCTGCGGTCTCTCTGCA 33213 >seq23 Length=690853 Score = 116 bits (128), Expect = 5e-21 Identities = 347/531 (65%), Gaps = 12/531 (2%) Strand=Plus/Minus Query 46680 AAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCC 46739 ||| ||||| || ||||| || |||||||| ||||||||||| || | ||||| || || Sbjct 88893 AAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCC 88834 Query 46740 AGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC 46799 ||| || || || || || ||||| || || || ||||| | | | | | | | || Sbjct 88833 AGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTC 88774 Query 46800 AT--TATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTC 46856 | | || |||||| | | ||||| || || |||| ||| | || || ||||| || Sbjct 88773 GTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTC 88714 Query 46857 TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAG 46916 || |||| ||||| | || | | || || | |||||||| || | || Sbjct 88713 GATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAG 88654 Query 46917 ACTATACATTTCTGAATGAATGTTTTCAATAGCC---ATCTGAAATCCGTAAAAACATCT 46973 || | ||||| || |||||||| ||| ||||| || || || || |||| Sbjct 88653 GGAGTAGGTCTCTGAGTGGATGTTTTC---CGCCATGATCTGGAAGCCATAGAAGCATCG 88597 Query 46974 TGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCC 47033 ||| || | | || || || | | || || || |||||| ||||| || || || Sbjct 88596 TGCCTCTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCC 88537 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 |||||| || ||||| || || | || || || || | ||| ||| | || Sbjct 88536 ATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAG 88477 Query 47094 TTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGA 47150 || || |||||| | | || || || | || | || || || |||||||| || Sbjct 88476 CTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGA 88417 Query 47151 CGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 || ||||| ||||| ||||| | ||| || || |||| | ||| || || Sbjct 88416 TGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934007886080