Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq40 125 2e-23
seq43 120 7e-22
>seq40
Length=667070
Score = 125 bits (138), Expect = 2e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || ||||| ||||| || ||||||||||| || || | || |
Sbjct 1496 GAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCG 1437
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || || || ||||| || | ||||||||| | || ||| |||||
Sbjct 1436 GCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTC 1377
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || ||||| |||||| | || | ||||||| ||| || || || ||
Sbjct 1376 CTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGT 1317
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||||||||| ||||| ||||||| |||||
Sbjct 1316 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
>seq43
Length=605699
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| || ||||| ||||| || ||||||||||| || || | || | |||||
Sbjct 451350 GAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATC 451409
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || || || ||||| || | | ||||||||||| | || |||||||| ||
Sbjct 451410 TTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTC 451469
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||||| |||||| | || | | ||||||| || || ||||| ||||| ||
Sbjct 451470 CTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGT 451529
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCT 152100
||||| || || ||||| || |||| ||
Sbjct 451530 CTTGCCAGTAAGTGTCTTGACAAAGATCT 451558
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| || ||||| ||||| || ||||||||||| || || ||||| | || ||
Sbjct 450894 GAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTC 450953
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || || || || | ||||||||| | | ||| |||||||| ||
Sbjct 450954 CTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTC 451013
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||| || || |||||| | || | | ||||||| |||||| ||||| ||||| ||
Sbjct 451014 TTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGT 451073
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || | ||||| ||||| | |||||
Sbjct 451074 CTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820149533524
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |