Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq40 125 2e-23 seq43 120 7e-22 >seq40 Length=667070 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| || || | || | Sbjct 1496 GAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCG 1437 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || || ||||| || | ||||||||| | || ||| ||||| Sbjct 1436 GCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTC 1377 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || ||||| |||||| | || | ||||||| ||| || || || || Sbjct 1376 CTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGT 1317 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||||||||| ||||| ||||||| ||||| Sbjct 1316 GATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278 >seq43 Length=605699 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || ||||| ||||| || ||||||||||| || || | || | ||||| Sbjct 451350 GAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATC 451409 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || ||||| || | | ||||||||||| | || |||||||| || Sbjct 451410 TTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTC 451469 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||||| |||||| | || | | ||||||| || || ||||| ||||| || Sbjct 451470 CTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGT 451529 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCT 152100 ||||| || || ||||| || |||| || Sbjct 451530 CTTGCCAGTAAGTGTCTTGACAAAGATCT 451558 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| || ||||| ||||| || ||||||||||| || || ||||| | || || Sbjct 450894 GAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTC 450953 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || || || || | ||||||||| | | ||| |||||||| || Sbjct 450954 CTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTC 451013 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | ||||||| |||||| ||||| ||||| || Sbjct 451014 TTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGT 451073 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | ||||| Sbjct 451074 CTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820149533524