Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq43 181 2e-40
seq40 154 3e-32
>seq43
Length=605699
Score = 181 bits (200), Expect = 2e-40
Identities = 179/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || ||||| |||||||| ||
Sbjct 450651 ACCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGC 450710
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||||||||| ||||| || || || || ||||| || | ||| || |||||| ||
Sbjct 450711 AAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGG 450770
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| |||||||||||||| ||| ||||| || ||| | || || ||||| || | |||||
Sbjct 450771 AATGCCCTCCTTGTCTTGAATC-TTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGA 450829
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||||| || || ||||| || ||||||||||||||||| ||||||||
Sbjct 450830 CTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878
Score = 147 bits (162), Expect = 5e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| ||||| || || | |||| || || || || || || ||||||||||| ||
Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||||| |||||||| || || || || |||||||| | ||| || |||||| |||
Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||| ||||||||||| ||| ||||| || ||| | || || ||||| || | || ||
Sbjct 450544 ATACCTTCCTTGTCTTGAATC-TTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTAC 450602
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || |||| |||||| ||||| || |||||
Sbjct 450603 CTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 131 bits (144), Expect = 4e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || || || | || || || |||||||||||||| ||
Sbjct 450879 ACCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGC 450938
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||||| || ||||| || || || || ||||| || | ||| || |||||| ||
Sbjct 450939 CAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGG 450998
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||| ||||||||||||||| ||||| || || | || || ||||| || | || |
Sbjct 450999 GATACCTTCCTTGTCTTGGATC-TTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTA 451057
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || || || ||||| || ||||| ||||| ||||| || |||||
Sbjct 451058 CCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Score = 127 bits (140), Expect = 4e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || || || | || || || || || |||||||| ||
Sbjct 451107 ACCACCACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGC 451166
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||||| |||||||| || || || || ||||| || | ||| || || ||| ||
Sbjct 451167 CAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGG 451226
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| || ||| ||||| || || | || || ||||| || | || |
Sbjct 451227 AATGCCCTCCTTGTCCTGAATC-TTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAA 451285
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| ||||| || || | |||||| || || ||||||||
Sbjct 451286 CCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334
Score = 120 bits (132), Expect = 6e-22
Identities = 161/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || || || || | || || || |||||||||||||| ||
Sbjct 451335 ACCACCACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGC 451394
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||| ||||| || || || || || || || |||||||| || ||||| ||
Sbjct 451395 AAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGG 451454
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || |||||||| || || || | || || | || || ||||| || | ||| ||
Sbjct 451455 AATCCCTTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAAC 451514
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095
|| || || || ||||| || || | ||||| || || ||||
Sbjct 451515 CTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCT 451558
Score = 104 bits (114), Expect = 5e-17
Identities = 195/287 (68%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 299559 CATCGACGTCATGGCATACCCCATCAAAGAAGCGCAGACATCGAACATGCTGCGCCGCCC 299618
||||||||||| ||||| ||| ||||| || || |||| || | ||| ||
Sbjct 34173 CATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGTTCCAACAAGCGTCACCGACC 34232
Query 299619 CATCGGCGTGGGGGTACAAGGACTTCAGGATGTGTTCTTCAAACTGAAGCTCCCATTTGA 299678
|||||| | || || ||||| || |||| ||||| ||| ||||| ||||| ||
Sbjct 34233 CATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGCCATTCGA 34292
Query 299679 CTCTCCGGAGGCCAGGGATCTTAACCGGGAAATCTTCGAGCATATCTACTACGCTGCCGT 299738
||| || ||||||| ||| || ||| ||||||| ||| |||||| ||| ||| |
Sbjct 34293 CTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGGTGCTCT 34352
Query 299739 TGAAGCGTCGGTAGAACTCGCGGAAATCCACGGGCCTCACCCCACCTTCGAAGGGTCTCC 299798
|||||| ||| || || || || | || || || | |||| ||| || || ||
Sbjct 34353 TGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGGCTCACC 34412
Query 299799 TGCAAGTAAGGGCATCCTCCAATACCACTTGTGGGATGTTACCCCCA 299845
||| | |||| | | || || |||||||| |||| || ||||
Sbjct 34413 TGCCTCTCAGGGACTTTTGCAGTATGACTTGTGGAATGTCACACCCA 34459
>seq40
Length=667070
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || || || | || || || |||||||||||||| ||
Sbjct 1505 ACCTCCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGC 1446
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| || || || || |||||||| | ||| || |||||| |||
Sbjct 1445 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGG 1386
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| || |||||||| ||||| || | || || | ||||| ||||| || | |||||
Sbjct 1385 GATGCCTTCCTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGAC 1326
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| ||||| | ||||| ||||| || |||||
Sbjct 1325 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738609900776
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