Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq40 141 7e-29 seq43 123 2e-23 >seq40 Length=667070 Score = 141 bits (156), Expect = 7e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || ||||| ||| |||| || Sbjct 1486 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCG 1427 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||| || | || | |||||||| ||| Sbjct 1426 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1367 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||| || ||| | || ||||| | ||| || ||||| | || || |||| Sbjct 1366 ATTTTCGACTTGACATTGT--CGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCT 1309 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||||||| |||||||||||||| Sbjct 1308 TGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278 >seq43 Length=605699 Score = 123 bits (136), Expect = 2e-23 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || || ||| ||| | || || Sbjct 451353 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTC 451412 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || |||||||||||||| || | || | |||||||| ||| Sbjct 451413 AAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTG 451472 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || ||| ||| || ||| | |||||||| | |||||| ||||| | ||||| ||| Sbjct 451473 AATTTTCGACTTGACATTGT--CAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTC 451530 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGAT 44331 || || || || ||||| || ||||| Sbjct 451531 TTGCCAGTAAGTGTCTTGACAAAGAT 451556 Score = 116 bits (128), Expect = 3e-21 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || || |||||| ||||||||||| || || | ||| |||| || Sbjct 450897 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTC 450956 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||| || | ||||||||| || | || | ||||||||| || Sbjct 450957 AAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTG 451016 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| || ||| | |||||||| | || || ||||| | ||||| ||| Sbjct 451017 GATCTTGCTCTTGACATTGT--CAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTC 451074 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | ||||| ||||| |||||||| Sbjct 451075 TTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| || || ||||| ||||| | ||| | || || Sbjct 451126 ACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCA 451185 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||| || | |||||||||||| | || | || ||||| ||| Sbjct 451186 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGA 451245 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || || ||||| | || || |||| Sbjct 451246 ATCTTGCTCTTGACATTGT--CAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCT 451303 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || ||||| ||||| Sbjct 451304 TTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990206955148