Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq40 141 7e-29
seq43 123 2e-23
>seq40
Length=667070
Score = 141 bits (156), Expect = 7e-29
Identities = 159/211 (75%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| ||||||||||| || ||||| ||| |||| ||
Sbjct 1486 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCG 1427
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||| | ||||||||| || | || | |||||||| |||
Sbjct 1426 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1367
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|| ||| ||| || ||| | || ||||| | ||| || ||||| | || || ||||
Sbjct 1366 ATTTTCGACTTGACATTGT--CGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCT 1309
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| |||||||||||||| ||||||||||||||
Sbjct 1308 TGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
>seq43
Length=605699
Score = 123 bits (136), Expect = 2e-23
Identities = 152/206 (74%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| || || ||| ||| | || ||
Sbjct 451353 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTC 451412
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || || || |||||||||||||| || | || | |||||||| |||
Sbjct 451413 AAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTG 451472
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
|| ||| ||| || ||| | |||||||| | |||||| ||||| | ||||| |||
Sbjct 451473 AATTTTCGACTTGACATTGT--CAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTC 451530
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGAT 44331
|| || || || ||||| || |||||
Sbjct 451531 TTGCCAGTAAGTGTCTTGACAAAGAT 451556
Score = 116 bits (128), Expect = 3e-21
Identities = 154/212 (73%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||| ||||| || || |||||| ||||||||||| || || | ||| |||| ||
Sbjct 450897 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTC 450956
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|||||||| || ||||| || | ||||||||| || | || | ||||||||| ||
Sbjct 450957 AAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTG 451016
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||| | || || ||||| | ||||| |||
Sbjct 451017 GATCTTGCTCTTGACATTGT--CAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTC 451074
Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| || | ||||| ||||| ||||||||
Sbjct 451075 TTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| || || ||||| ||||| | ||| | || ||
Sbjct 451126 ACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCA 451185
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || ||||| || | |||||||||||| | || | || ||||| |||
Sbjct 451186 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGA 451245
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | |||||||| | || || ||||| | || || ||||
Sbjct 451246 ATCTTGCTCTTGACATTGT--CAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCT 451303
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || || ||||| || ||||| |||||
Sbjct 451304 TTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990206955148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |