Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq43 159 8e-34
seq40 141 2e-28
>seq43
Length=605699
Score = 159 bits (176), Expect = 8e-34
Identities = 159/205 (78%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || ||||| || ||||| |||||||| || ||||||
Sbjct 450647 CAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCAGAC 450588
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||| ||||| ||||| || || || ||||||||
Sbjct 450587 ACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAGCAG 450528
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| ||||| || ||||| | ||| | ||||| || ||| |
Sbjct 450527 CGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAACATT 450468
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || |||||| |||| ||||
Sbjct 450467 CAGAAGGAGTCAACATTGCA-CTTG 450444
Score = 141 bits (156), Expect = 2e-28
Identities = 153/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986
|| || || || || || || || || || || ||||| ||||| ||| ||||||||||
Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497
Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046
|| || || ||||| || ||||||||||| ||||| || || ||||||||||| ||
Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437
Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106
| || ||||| || || ||||| |||||||| | || ||||| || || ||| ||||
Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377
Query 178107 AAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || |||||
Sbjct 451376 AAGGAGTCAACTCTCCACCTTGT 451354
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||| | || ||||| || || || ||||| || ||| ||||||
Sbjct 450875 CAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCAGAC 450816
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| |||||||| ||||| || || || || || ||||||||
Sbjct 450815 ACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAGCAG 450756
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||||| || || || | || ||||| || || || ||
Sbjct 450755 CGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAATATC 450696
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 450695 CAGAAGGAGTCAACTCTCCACCTTGT 450670
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || | || ||||| || || || || ||||| || ||||||
Sbjct 451103 CAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCAGAC 451044
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| ||||| || ||||| ||||| ||||| || ||||||||
Sbjct 451043 ACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAGCAG 450984
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||||| || || || | ||| | || || || ||| ||
Sbjct 450983 CGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAACATC 450924
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 450923 CAGAAGGAGTCAACTCTCCACCTTGT 450898
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || ||||| || ||||| |||||||| || ||||||
Sbjct 451331 CAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCAGAC 451272
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || || || || || |||||
Sbjct 451271 ACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAGCAG 451212
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||||| || ||||| | ||| | ||||| || || |
Sbjct 451211 CGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAATATT 451152
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 451151 CAGAAGGAGTCAACCCTCCACCTTGT 451126
>seq40
Length=667070
Score = 141 bits (156), Expect = 2e-28
Identities = 155/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || |||||||||||||| || |||||||
Sbjct 1281 CAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCAGAC 1340
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| || || |||||||| ||||| ||||| || ||||||||
Sbjct 1341 ACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 1400
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || |||||||| || || | || || || || || ||| ||
Sbjct 1401 CGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAACATC 1460
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 1461 CAGAAGGAGTCGACTCTCCACCTCGT 1486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730521396536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |