Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3 100 6e-16 >seq3 Length=2452883 Score = 100 bits (110), Expect = 6e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 319858 GGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCG 319917 ||||| ||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||| Sbjct 1687131 GGGAAACCTTCAACTTGACCGTTGACAATGGCACGCATAAGGGTAGACTTACCGGAACCG 1687072 Query 319918 TTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGA 319977 || || || || ||||| || || || || || || || || || ||| ||| Sbjct 1687071 TTAGGACCGCAAAGACCATAACGACGACCACGCTTAAGACGGAGACGAGTACGGTTAAGA 1687012 Query 319978 AGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || ||||||| || ||||| || ||||| | || ||||||||||| Sbjct 1687011 AGAATCTTGGCACCATAAGCAAGAGAGAACTCACAGTTGCAAAGATCCTCACC 1686959 Score = 91.5 bits (100), Expect = 3e-13 Identities = 187/272 (69%), Gaps = 7/272 (3%) Strand=Plus/Minus Query 319398 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 319457 |||||| ||||||||||||| || || ||||| ||||| | | | ||||| Sbjct 1687576 CTTCTTAACGAACTCGGACATGTTACCAAGATACTTACGAAGCTTGAA---ACGCTCGTA 1687520 Query 319458 ATGGATAATAGAGGTGCA-AACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGC 319516 |||||||| | || | ||| ||| | ||| || |||||||| || ||||| | | Sbjct 1687519 GTGGATAATGGCT-TGAACAACGTGGTCCAAGAAACCAGAGTCGTGAGAGACAATGATGG 1687461 Query 319517 ACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGA-A 319575 | ||||| ||||| |||| | || | | |||||| || || |||| | | Sbjct 1687460 AAGAAACATCCTTTTGGTTAACCAAAAAGTTCTCCAACCAGGCAACATT-GACAACGTCA 1687402 Query 319576 AGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCA 319635 ||||||||||| ||||| ||||| | || | | | |||| || ||| ||||| | | Sbjct 1687401 AGATGGTTGGTAGGCTCATCAAGCAAAAGAATATCGGGGTTCTTGAACATAGCACGGGTA 1687342 Query 319636 AGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 ||||| | |||||| ||||| || || ||||| Sbjct 1687341 AGAGCCAATTTCATCTTCCAACCACCAGAAAG 1687310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823945786520