Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 170 2e-37
>seq2
Length=4539804
Score = 170 bits (188), Expect = 2e-37
Identities = 465/700 (66%), Gaps = 14/700 (2%)
Strand=Plus/Minus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
||||| || || || ||||| || ||| ||| ||||||||||||||||| ||||||||
Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTG 3722777
Query 16754 GTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812
|| | | | | || || | | ||| | | | | || | ||| || ||||||||
Sbjct 3722776 GTTACGTTATAGTACTTGTCATTGCCCAAAG-CAACCAACAAACGATCAGCAACAAATTC 3722718
Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872
||||| || ||||| || || ||||| || | |||| || |||||||| |||||
Sbjct 3722717 AATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGT 3722658
Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACT-CGTTCCTCGG 16931
|| || || ||| ||| |||| ||||| |||||| |||| | || | ||
Sbjct 3722657 GAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAACCTTGC--GG 3722600
Query 16932 AC-GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990
| ||| | || || | ||| ||||||||| ||| || || ||| || | |||||
Sbjct 3722599 CCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCA 3722540
Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050
|| | | || | ||| || ||||| || | || ||||| ||| |||||||| | |
Sbjct 3722539 TCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGC 3722480
Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110
||||| || | ||| ||||| ||||||||||| ||||| || || | ||||| || |
Sbjct 3722479 CAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACC 3722420
Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170
|| || || || || | |||| | | |||||| | |||||| ||||||
Sbjct 3722419 AAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTG 3722360
Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCT-TAAATAATTTCTCTTTTTCCTGTAGGT- 17228
||| || || |||| ||| || || | |||| | || |||||||| |||||
Sbjct 3722359 GCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGA-CGCTGTTTTTCCT-TAGGTT 3722302
Query 17229 --CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286
||| || || ||||| | | || ||| | || ||||| || || || ||
Sbjct 3722301 CACGA--ATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCAT 3722244
Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346
|| || || || |||| || || ||||| | || |||||||| | ||| || ||
Sbjct 3722243 AATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTC 3722184
Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386
||||| || || || || || || ||| ||||||
Sbjct 3722183 GAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAA 3722144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545574122720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |