Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 >seq2 Length=4539804 Score = 170 bits (188), Expect = 2e-37 Identities = 465/700 (66%), Gaps = 14/700 (2%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 ||||| || || || ||||| || ||| ||| ||||||||||||||||| |||||||| Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTG 3722777 Query 16754 GTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 || | | | | || || | | ||| | | | | || | ||| || |||||||| Sbjct 3722776 GTTACGTTATAGTACTTGTCATTGCCCAAAG-CAACCAACAAACGATCAGCAACAAATTC 3722718 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 ||||| || ||||| || || ||||| || | |||| || |||||||| ||||| Sbjct 3722717 AATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGT 3722658 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACT-CGTTCCTCGG 16931 || || || ||| ||| |||| ||||| |||||| |||| | || | || Sbjct 3722657 GAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGCTTCAACAACCTTGC--GG 3722600 Query 16932 AC-GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990 | ||| | || || | ||| ||||||||| ||| || || ||| || | ||||| Sbjct 3722599 CCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCA 3722540 Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050 || | | || | ||| || ||||| || | || ||||| ||| |||||||| | | Sbjct 3722539 TCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGC 3722480 Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110 ||||| || | ||| ||||| ||||||||||| ||||| || || | ||||| || | Sbjct 3722479 CAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACC 3722420 Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170 || || || || || | |||| | | |||||| | |||||| |||||| Sbjct 3722419 AAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTG 3722360 Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCT-TAAATAATTTCTCTTTTTCCTGTAGGT- 17228 ||| || || |||| ||| || || | |||| | || |||||||| ||||| Sbjct 3722359 GCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGA-CGCTGTTTTTCCT-TAGGTT 3722302 Query 17229 --CGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 ||| || || ||||| | | || ||| | || ||||| || || || || Sbjct 3722301 CACGA--ATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCAT 3722244 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || || || || |||| || || ||||| | || |||||||| | ||| || || Sbjct 3722243 AATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTC 3722184 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 ||||| || || || || || || ||| |||||| Sbjct 3722183 GAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAA 3722144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545574122720