Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=4539804 Score = 143 bits (158), Expect = 3e-29 Identities = 563/873 (64%), Gaps = 13/873 (1%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||||||| ||| ||| ||||| ||||| || |||||||| ||||||| ||||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030 |||| ||||| || ||||| || | | | | || | | | ||| | ||| Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACA 3722737 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 || | ||| || |||||||| ||||| |||||||| || || ||| || || | || Sbjct 3722736 AA-CGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGA 3722678 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 | || |||||||| | || || ||| || || || |||| ||||| ||| || Sbjct 3722677 CTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATG 3722618 Query 16151 TCGGTGGCTCGTGTTTCAGAC-GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209 | | || | | | ||| | || || | || ||||||| | ||| || || Sbjct 3722617 GCTTCAACAACC-TTGCGGCCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAA 3722559 Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269 |||| || || || || || | | || | ||| ||||||||||| | || ||||| Sbjct 3722558 GTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCAT 3722499 Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329 ||| |||||||| | ||| || || | ||||| || || |||||||| ||||| || Sbjct 3722498 AAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTC 3722439 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 |||| ||||| || | || || || || || | ||||| || | |||||| Sbjct 3722438 TACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACG 3722379 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 | |||| | |||||| || ||| || |||| ||| || || | || Sbjct 3722378 AAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACG 3722319 Query 16450 CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT--GTACATTTCTGAG 16507 || |||||||| | || || || ||||||| || ||| | ||| | || ||| Sbjct 3722318 CTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCA--AAAGTGAGTAGGTCTCAGAG 3722261 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || || || || || || || || ||||| | || ||||| || | || || ||| Sbjct 3722260 TGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACT 3722201 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 || | || || || || |||||||| || ||||| || ||||| ||| | Sbjct 3722200 TCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAATAG 3722141 Query 16628 GCCAATA-TGTGCTTAATGAAATATTTTTCGTCAG-ATGTAA--GAATATGCCAATCTTT 16683 || | || ||| ||| || || ||| |||| || ||| ||| |||||| Sbjct 3722140 GCGAGTACAGTG-GAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAAC 3722082 Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATA 16743 || ||||| || | ||| | ||| || | |||||||| || | ||||| || || Sbjct 3722081 CAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTA 3722022 Query 16744 CATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 | || |||||| || | || | || ||||| Sbjct 3722021 GAATTGCCAAATTTCGTGATACTTAATTGGAAA 3721989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414374429280