Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
>seq2
Length=4539804
Score = 143 bits (158), Expect = 3e-29
Identities = 563/873 (64%), Gaps = 13/873 (1%)
Strand=Plus/Minus
Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971
||||||| ||| ||| ||||| ||||| || |||||||| ||||||| ||||| |
Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797
Query 15972 CCATAAAATCAAAGGGATTAGTAGC-TGAAAATATCTTAGAGTACCCCAGTTCCGTAACT 16030
|||| ||||| || ||||| || | | | | || | | | ||| | |||
Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACA 3722737
Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090
|| | ||| || |||||||| ||||| |||||||| || || ||| || || | ||
Sbjct 3722736 AA-CGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGA 3722678
Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150
| || |||||||| | || || ||| || || || |||| ||||| ||| ||
Sbjct 3722677 CTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATG 3722618
Query 16151 TCGGTGGCTCGTGTTTCAGAC-GGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAA 16209
| | || | | | ||| | || || | || ||||||| | ||| || ||
Sbjct 3722617 GCTTCAACAACC-TTGCGGCCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAA 3722559
Query 16210 GTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCAT 16269
|||| || || || || || | | || | ||| ||||||||||| | || |||||
Sbjct 3722558 GTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCAT 3722499
Query 16270 TTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTC 16329
||| |||||||| | ||| || || | ||||| || || |||||||| ||||| ||
Sbjct 3722498 AAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTC 3722439
Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389
|||| ||||| || | || || || || || | ||||| || | ||||||
Sbjct 3722438 TACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACG 3722379
Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449
| |||| | |||||| || ||| || |||| ||| || || | ||
Sbjct 3722378 AAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACG 3722319
Query 16450 CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT--GTACATTTCTGAG 16507
|| |||||||| | || || || ||||||| || ||| | ||| | || |||
Sbjct 3722318 CTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCA--AAAGTGAGTAGGTCTCAGAG 3722261
Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567
|| || || || || || || || ||||| | || ||||| || | || || |||
Sbjct 3722260 TGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACT 3722201
Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627
|| | || || || || |||||||| || ||||| || ||||| ||| |
Sbjct 3722200 TCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAATAG 3722141
Query 16628 GCCAATA-TGTGCTTAATGAAATATTTTTCGTCAG-ATGTAA--GAATATGCCAATCTTT 16683
|| | || ||| ||| || || ||| |||| || ||| ||| ||||||
Sbjct 3722140 GCGAGTACAGTG-GAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAAC 3722082
Query 16684 TAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATA 16743
|| ||||| || | ||| | ||| || | |||||||| || | ||||| || ||
Sbjct 3722081 CAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTA 3722022
Query 16744 CATTTTCCAAATATCATTGTATTGTATGGGAAA 16776
| || |||||| || | || | || |||||
Sbjct 3722021 GAATTGCCAAATTTCGTGATACTTAATTGGAAA 3721989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511414374429280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |