Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 277 2e-69
seq2 260 2e-64
>seq1
Length=5579133
Score = 277 bits (306), Expect = 2e-69
Identities = 1393/2198 (63%), Gaps = 45/2198 (2%)
Strand=Plus/Minus
Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897
||||| |||||||||||||| || || ||||| |||| || ||||| ||||||||
Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457
Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957
|| | ||| || ||||| | || || |||| | ||| |||||| |||
Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397
Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017
|| | || | ||| ||||| | || | |||||||| ||| ||||| | |||
Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337
Query 53018 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGATCCACCATCT 53074
|| |||| ||||| |||| |||| | | | || || || |||||| ||
Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277
Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134
| | || | ||||| || || |||||||| || | | ||| | | | | |
Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217
Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194
|| ||||| || | ||| ||||| ||||| | || | || ||| || |||
Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157
Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254
||||| || || | | ||||||| || | ||||||| ||||| ||||| |||||
Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097
Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314
||||| || || ||| ||| | || |||| | | || || || || | ||
Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037
Query 53315 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 53374
|||| ||||||||| | || ||| |||| |||||| |||
Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981
Query 53375 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 53430
| | | |||||| |||| | || |||| || || || || | || |||
Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921
Query 53431 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTG-CT 53488
||||| | || ||| ||||| ||||||||||| | | ||||| | |||| |
Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861
Query 53489 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACAC 53546
| ||| | | ||||| ||| ||||| || ||| || || || | ||||||||||
Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805
Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 53605
| | ||| | || | ||| | | |||| | | | |||||| |||| |||||||||
Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746
Query 53606 TTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 53665
|||| || ||||| || |||||||| | || || || || ||||| | || ||
Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686
Query 53666 AGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAA 53725
| |||| | | ||| ||| | | ||| || ||| |||| || || || ||||||
Sbjct 4228685 TGGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAA 4228626
Query 53726 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 53785
|| || || || | || | | |||| | |||||||| || || || ||
Sbjct 4228625 ACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGA 4228566
Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 53845
|| || || | ||| | ||||| ||| ||| || | ||||||||| | |||||
Sbjct 4228565 ATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAA 4228506
Query 53846 GGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATT 53905
|| |||||||||||| || |||| | ||| || | ||| || |||| ||
Sbjct 4228505 GGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA-- 4228448
Query 53906 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTC 53963
|| | | | | ||||| ||| ||| | | || | |||||||||| |
Sbjct 4228447 ATGAACGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCAC 4228388
Query 53964 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023
||||||||| |||| || ||| |||| || || | || | ||| | ||| |
Sbjct 4228387 CCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTA- 4228329
Query 54024 CCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082
| |||| | |||| |||||| | ||||||||||| | || ||| | | || || ||
Sbjct 4228328 CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGTG 4228271
Query 54083 CTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140
| | |||||||| || | ||||| ||| || | || |||||| ||| | ||
Sbjct 4228270 CGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCAT 4228211
Query 54141 GCCACGGTTCCAAGTATATGGTCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198
|||| || ||||| ||| | | || | ||||| || || || ||||| || || |
Sbjct 4228210 GCCAAGGCTCCAA--ATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAAC 4228153
Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258
|| | ||| ||||| || ||||| | | ||| || | ||| || ||||| | ||||||
Sbjct 4228152 ATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATT 4228093
Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318
|| || | ||||| || | || | ||| || ||| | ||| || || ||
Sbjct 4228092 AGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCC 4228033
Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378
|| | || ||||| | || || || | || || ||||| || || ||| ||
Sbjct 4228032 AGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTC 4227973
Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438
|| |||| ||| || ||||| ||| | |||| ||||| ||| || ||||| ||
Sbjct 4227972 GTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAA 4227913
Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498
| || || ||||| || ||||| | || ||| | | |||||| || || |||||
Sbjct 4227912 AAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGC 4227853
Query 54499 TGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 54557
| || || ||| || | || || || || ||||||||||| | ||| |||||||| |
Sbjct 4227852 AGCTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGC 4227794
Query 54558 TTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617
||| | | ||| || || || || || || || ||||| || || ||||
Sbjct 4227793 GCTCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAA 4227734
Query 54618 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATT 54677
| | ||||| | || || || ||||| || ||| | | | || ||||| | ||
Sbjct 4227733 AGAAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTT 4227674
Query 54678 TGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 54737
| | || | ||| | | | || || || || | | | || | |||| ||||
Sbjct 4227673 TCATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGAT 4227614
Query 54738 TGACATAGTTAAATAAATCCTT----CATCACTTCACTAAATAGtttttttGTTTCTTTG 54793
| ||||||| || || | | | || || | ||| | || | |||| ||
Sbjct 4227613 TTACATAGT--CATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTA 4227558
Query 54794 TGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 54853
|| | || || || || |||||||| || | ||| |||||||| ||||| | ||||||
Sbjct 4227557 TGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTC 4227498
Query 54854 CAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 54913
||| || || |||| || | | | | |||||||| | || || || || |||
Sbjct 4227497 ATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATAC 4227438
Query 54914 ATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCA 54973
| || || || || || |||| | ||||| | |||||| | | | ||||
Sbjct 4227437 ACACCAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCA 4227378
Query 54974 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 55011
||||| | | || ||||| |||||||| |||||
Sbjct 4227377 TAACAAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340
>seq2
Length=4539804
Score = 260 bits (288), Expect = 2e-64
Identities = 600/896 (67%), Gaps = 12/896 (1%)
Strand=Plus/Minus
Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888
|||||||| || ||||||| ||| || ||||| || ||||| ||||| |||
Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813
Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948
|||| || ||||| |||||||||||| | |||||||| || |||||| | ||| | | |
Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAG-TACTTGTCATT 3722754
Query 23949 -CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007
||||| || | ||| | ||| || ||||| || ||||| ||||| ||
Sbjct 3722753 GCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTT 3722694
Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067
|||||| || | || |||| |||||||| | || | |||||| |||||| ||
Sbjct 3722693 ATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAAC 3722634
Query 24068 CGCGTCTGTTATAATAGATCTTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTA 24125
|| || ||||| | | || || | | || ||| | | ||||| ||
Sbjct 3722633 AGCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTA 3722576
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
||||||||||| || || ||| ||| |||||||| || | || ||| ||||| ||||||
Sbjct 3722575 AACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAA 3722516
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || || ||||| || ||||| || ||||||||||| || || ||||| ||||||
Sbjct 3722515 AAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCA 3722456
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302
|||||||| || |||||||| || |||||||||| | | | |||| || |
Sbjct 3722455 GAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCT 3722396
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362
|||| ||||| ||||||| | ||| || || | | || ||||||
Sbjct 3722395 TCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAA 3722336
Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422
||||||| || || | |||||| ||| || || |||||||||| ||||||
Sbjct 3722335 ATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGT 3722276
Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482
|| | || || ||||| |||||||| ||||| || || || | ||| | |||
Sbjct 3722275 GAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCT 3722216
Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
|| | ||||| ||||| | || || || | ||| ||||| || || || ||
Sbjct 3722215 TCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCT 3722156
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GT 24599
|| || ||| | || | |||| ||||| || ||| || | |||
Sbjct 3722155 GACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTG 3722096
Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659
|||| ||||||| | ||||| || | ||| | ||| || | |||||||| |||||
Sbjct 3722095 TTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCT 3722036
Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
|| ||||| || || | | ||| || || ||||| | ||||||||| | ||||||
Sbjct 3722035 TCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721570313920
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