Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 277 2e-69 seq2 260 2e-64 >seq1 Length=5579133 Score = 277 bits (306), Expect = 2e-69 Identities = 1393/2198 (63%), Gaps = 45/2198 (2%) Strand=Plus/Minus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 ||||| |||||||||||||| || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 52898 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 52957 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 52958 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 53017 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 53018 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATAGATCCACCATCT 53074 || |||| ||||| |||| |||| | | | || || || |||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 53075 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 53134 | | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 53135 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 53194 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 53195 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 53254 ||||| || || | | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 53255 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 ||||| || || ||| ||| | || |||| | | || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 53315 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 53374 |||| ||||||||| | || ||| |||| |||||| ||| Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981 Query 53375 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 53430 | | | |||||| |||| | || |||| || || || || | || ||| Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 53431 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTG-CT 53488 ||||| | || ||| ||||| ||||||||||| | | ||||| | |||| | Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861 Query 53489 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACAC 53546 | ||| | | ||||| ||| ||||| || ||| || || || | |||||||||| Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 53605 | | ||| | || | ||| | | |||| | | | |||||| |||| ||||||||| Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746 Query 53606 TTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 53665 |||| || ||||| || |||||||| | || || || || ||||| | || || Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686 Query 53666 AGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAA 53725 | |||| | | ||| ||| | | ||| || ||| |||| || || || |||||| Sbjct 4228685 TGGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAA 4228626 Query 53726 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 53785 || || || || | || | | |||| | |||||||| || || || || Sbjct 4228625 ACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGA 4228566 Query 53786 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 53845 || || || | ||| | ||||| ||| ||| || | ||||||||| | ||||| Sbjct 4228565 ATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAA 4228506 Query 53846 GGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATT 53905 || |||||||||||| || |||| | ||| || | ||| || |||| || Sbjct 4228505 GGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA-- 4228448 Query 53906 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATCGTTCAAACTCGTCTC 53963 || | | | | ||||| ||| ||| | | || | |||||||||| | Sbjct 4228447 ATGAACGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCAC 4228388 Query 53964 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 54023 ||||||||| |||| || ||| |||| || || | || | ||| | ||| | Sbjct 4228387 CCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTA- 4228329 Query 54024 CCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082 | |||| | |||| |||||| | ||||||||||| | || ||| | | || || || Sbjct 4228328 CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGTG 4228271 Query 54083 CTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 54140 | | |||||||| || | ||||| ||| || | || |||||| ||| | || Sbjct 4228270 CGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCAT 4228211 Query 54141 GCCACGGTTCCAAGTATATGGTCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTAT 54198 |||| || ||||| ||| | | || | ||||| || || || ||||| || || | Sbjct 4228210 GCCAAGGCTCCAA--ATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAAC 4228153 Query 54199 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATT 54258 || | ||| ||||| || ||||| | | ||| || | ||| || ||||| | |||||| Sbjct 4228152 ATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATT 4228093 Query 54259 GGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCC 54318 || || | ||||| || | || | ||| || ||| | ||| || || || Sbjct 4228092 AGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCC 4228033 Query 54319 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 54378 || | || ||||| | || || || | || || ||||| || || ||| || Sbjct 4228032 AGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTC 4227973 Query 54379 ATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 54438 || |||| ||| || ||||| ||| | |||| ||||| ||| || ||||| || Sbjct 4227972 GTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAA 4227913 Query 54439 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGC 54498 | || || ||||| || ||||| | || ||| | | |||||| || || ||||| Sbjct 4227912 AAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGC 4227853 Query 54499 TGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 54557 | || || ||| || | || || || || ||||||||||| | ||| |||||||| | Sbjct 4227852 AGCTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGC 4227794 Query 54558 TTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617 ||| | | ||| || || || || || || || ||||| || || |||| Sbjct 4227793 GCTCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAA 4227734 Query 54618 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATT 54677 | | ||||| | || || || ||||| || ||| | | | || ||||| | || Sbjct 4227733 AGAAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTT 4227674 Query 54678 TGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 54737 | | || | ||| | | | || || || || | | | || | |||| |||| Sbjct 4227673 TCATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGAT 4227614 Query 54738 TGACATAGTTAAATAAATCCTT----CATCACTTCACTAAATAGtttttttGTTTCTTTG 54793 | ||||||| || || | | | || || | ||| | || | |||| || Sbjct 4227613 TTACATAGT--CATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTA 4227558 Query 54794 TGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTA 54853 || | || || || || |||||||| || | ||| |||||||| ||||| | |||||| Sbjct 4227557 TGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTC 4227498 Query 54854 CAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATAT 54913 ||| || || |||| || | | | | |||||||| | || || || || ||| Sbjct 4227497 ATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATAC 4227438 Query 54914 ATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCA 54973 | || || || || || |||| | ||||| | |||||| | | | |||| Sbjct 4227437 ACACCAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCA 4227378 Query 54974 TAACATAATTTTCTAATACGAGATGTGATTTTATCAAA 55011 ||||| | | || ||||| |||||||| ||||| Sbjct 4227377 TAACAAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 260 bits (288), Expect = 2e-64 Identities = 600/896 (67%), Gaps = 12/896 (1%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 |||||||| || ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948 |||| || ||||| |||||||||||| | |||||||| || |||||| | ||| | | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAG-TACTTGTCATT 3722754 Query 23949 -CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACA 24007 ||||| || | ||| | ||| || ||||| || ||||| ||||| || Sbjct 3722753 GCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTT 3722694 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 |||||| || | || |||| |||||||| | || | |||||| |||||| || Sbjct 3722693 ATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAAC 3722634 Query 24068 CGCGTCTGTTATAATAGATCTTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTA 24125 || || ||||| | | || || | | || ||| | | ||||| || Sbjct 3722633 AGCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTA 3722576 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||||||||||| || || ||| ||| |||||||| || | || ||| ||||| |||||| Sbjct 3722575 AACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAA 3722516 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || || ||||| || ||||| || ||||||||||| || || ||||| |||||| Sbjct 3722515 AAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCA 3722456 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 |||||||| || |||||||| || |||||||||| | | | |||| || | Sbjct 3722455 GAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCT 3722396 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 |||| ||||| ||||||| | ||| || || | | || |||||| Sbjct 3722395 TCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAA 3722336 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 ||||||| || || | |||||| ||| || || |||||||||| |||||| Sbjct 3722335 ATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGT 3722276 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || | || || ||||| |||||||| ||||| || || || | ||| | ||| Sbjct 3722275 GAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCT 3722216 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | ||||| ||||| | || || || | ||| ||||| || || || || Sbjct 3722215 TCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCT 3722156 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GT 24599 || || ||| | || | |||| ||||| || ||| || | ||| Sbjct 3722155 GACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTG 3722096 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 |||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| Sbjct 3722095 TTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCT 3722036 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 || ||||| || || | | ||| || || ||||| | ||||||||| | |||||| Sbjct 3722035 TCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721570313920