Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq2 84.2 2e-11 >seq1 Length=5579133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 ||||||||||| ||| ||||||| | ||||| || || |||||| || ||| || Sbjct 3108883 AAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCC 3108824 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || ||||| ||||| || |||||||| | || ||| Sbjct 3108823 TCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGAT 3108764 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 |||||| | ||||| || || || || || || |||||| ||| || | |||||| Sbjct 3108763 CAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTAC 3108704 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || |||||||| || ||||||||| | || || || Sbjct 3108703 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCG 3108666 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25028 TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA 25087 || ||| ||||| || || |||| || ||||| || ||||| || ||| || ||| Sbjct 2794731 TGAAAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGA 2794672 Query 25088 ACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGT 25147 | || | || || | | | || ||||| || ||| || || ||||| | || Sbjct 2794671 ATCCTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCC 2794612 Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 ||||||||| || | || ||||| || || || ||||| ||| ||| | | || Sbjct 2794611 TGATCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGA 2794552 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||||||| ||||| || || ||||||||| |||| Sbjct 2794551 TTACAATATCCAAAAAGAGTCCACTCTTCACTTGGT 2794516 >seq2 Length=4539804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| ||||| || || || || ||||| ||| ||| | | Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| || ||| ||||| ||||| | || |||||| Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||| ||||| || || ||| | |||||| ||| | | |||||||| Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387 Query 25215 ATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||||| |||||||||||| Sbjct 1045386 ATTCAAAAGGAGTCTACTCTTCAC 1045363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796779973656