Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 3e-25
seq2 116 6e-21
>seq1
Length=5579133
Score = 131 bits (144), Expect = 3e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| | || || ||||||||||| ||||| | ||| | |
Sbjct 2794724 ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCT 2794665
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || || ||||| || || ||||| || || |||||||||
Sbjct 2794664 GACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 2794605
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | | |||||||| ||||| || || |||||| |||| || | ||||| |||
Sbjct 2794604 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAAT 2794545
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| |||||||| || ||| | || |||||| | ||| | || ||||||||
Sbjct 2794544 ATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 2794495
Score = 109 bits (120), Expect = 8e-19
Identities = 173/247 (70%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | || || || || || || || || || | ||| | || |
Sbjct 3108881 AATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTC 3108822
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| |||| | || ||||| ||||| |||||||| || || ||||||||
Sbjct 3108821 TGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCA 3108762
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| | |||||||| || || || || ||||| ||| | || || || ||||| ||
Sbjct 3108761 ACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAA 3108702
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777
|| ||||| || || ||| | || | ||||| ||| | || |||||| ||| || |
Sbjct 3108701 CATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGGTGGTAAGAA-GC 3108643
Query 124778 ATAAAAA 124784
||||||
Sbjct 3108642 GTAAAAA 3108636
Score = 107 bits (118), Expect = 3e-18
Identities = 174/249 (70%), Gaps = 1/249 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| ||||| || ||| |||| || || || || || || || || | ||| ||||| |
Sbjct 3238365 ACGATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCC 3238306
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||| || ||| ||| | || ||||| |||||||| ||||| || || ||||||
Sbjct 3238305 TCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGAT 3238246
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||| | | || ||||| || || ||| | ||||| | || || || ||||||
Sbjct 3238245 CAACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTAT 3238186
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775
|| || ||||| || || ||| | || | ||||| ||| | || |||||| ||| ||
Sbjct 3238185 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGGTGGTAAGAA- 3238127
Query 124776 TCATAAAAA 124784
| ||||||
Sbjct 3238126 GCGTAAAAA 3238118
Score = 100 bits (110), Expect = 4e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| | || || || ||||| || | ||| | || | |
Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || ||||| ||||| || ||||| || || ||||| |||
Sbjct 3969069 GACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAA 3969128
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||| || || ||||| |||||||||||| | || || | || || ||
Sbjct 3969129 CAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAAC 3969188
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || || | ||||| ||| | ||| | || ||||||||
Sbjct 3969189 ATTCAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCGTGGTGGTAT 3969238
Score = 96.9 bits (106), Expect = 5e-15
Identities = 245/363 (67%), Gaps = 16/363 (4%)
Strand=Plus/Minus
Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619
|||| ||| || ||||| | ||| |||||||||| | |||| | || | ||| ||
Sbjct 3725346 ACATAAAACTGG-CAAAATATATGGCAAGGTGGTAAAGCCATTTCAGGAATAGCTAATGG 3725288
Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCA----GGtttattttttattttattta 205675
||||| |||| | |||||| | | ||| |||||| ||| | || ||
Sbjct 3725287 GTTCCAAGCTGAAAGAATTATA---CGACGGTCATAAGGGTTTAATTTG-AGGGTAGATA 3725232
Query 205676 tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATT 205735
||| || | | ||||| | ||||| ||| ||||| | ||||| ||||| |||||
Sbjct 3725231 TAACCTGAGCCAGCTGATCCACTCCTTTATTGGTATAGTCAGTATCGCAATCAACATATT 3725172
Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795
|| || ||||| | ||||||||||||||| | ||||| | ||||| |||| | ||
Sbjct 3725171 GCGCTCCGAAATGTCTCCATTGAAAACCATATATAGGACCGAGGTCACCAACTTTACGAT 3725112
Query 205796 CATTAAAACCACGttttttta--tatattttaatgatccattttcatcccaaatatggat 205853
|| ||| || | | | || || | || || ||||| ||||||| ||||| ||
Sbjct 3725111 CAGTAAGCCCTCTGCTGTCTAGGAATTCTCTACTG--CCATTGCCATCCCATATATGAAT 3725054
Query 205854 tcctttattttttaGAATATTTGTATTAGT-TGATCCAGATATAAACCATAATAATTCTT 205912
||||| | ||| | ||| | |||||| | | | || |||||||| | ||| ||||
Sbjct 3725053 CCCTTTTTCACTTAAATGATTGGCATTAGTATCACCGTGA-ATAAACCAAAGTAACTCTT 3724995
Query 205913 CAA 205915
|||
Sbjct 3724994 CAA 3724992
>seq2
Length=4539804
Score = 116 bits (128), Expect = 6e-21
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594
||| ||||| || || | |||||| |||| || || ||||| || | || ||||| |
Sbjct 1045570 TACCATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATC 1045511
Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654
||||| ||| ||| |||| || ||||| ||||| ||||| || || |||||
Sbjct 1045510 TTCCGATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGA 1045451
Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714
||||||| | ||||||||||| || || ||| | || ||| | || || | ||||||
Sbjct 1045450 TCAACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTA 1045391
Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| |||||||| || || ||| | || | ||| | ||| | || || ||||| |||
Sbjct 1045390 CAACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTATGCAAAT 1045331
Query 124775 TT 124776
||
Sbjct 1045330 TT 1045329
Score = 109 bits (120), Expect = 8e-19
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || | || || ||||| || || | || |||| | |
Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| |||| || ||||| ||||| ||||| || || |||||||||
Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||||||||| || || ||| | || ||| | || || | |||||| ||
Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| || || ||| | ||| | ||| | ||| | || || ||||| ||| ||
Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1045101
Score = 105 bits (116), Expect = 1e-17
Identities = 166/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || | || || ||||| || || | || |||| | |
Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| |||| || ||||| ||||| ||||| || || |||||||||
Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||||||||| || || ||| | || || | || || | |||||| ||
Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| || || ||| | ||| | ||| | ||| | || || ||||| ||| ||
Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1044645
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || | || || ||||| || || | || |||| | |
Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| |||| || ||||| ||||| ||||| || || |||||||||
Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||||||||| || || ||| | || ||| | || || | |||||| ||
Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769
|||||||| || || ||| | || | ||| | ||| | || || ||| ||
Sbjct 1044474 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTCTT 1044424
Score = 100 bits (110), Expect = 4e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || || | || || ||||| || || | || |||| | |
Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| |||| || ||||| ||||| ||||| || || |||||||||
Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||||||||| || || ||| | || || | || || | |||||| ||
Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| || || ||| | || | ||| | ||| | || || ||||| ||| ||
Sbjct 1044930 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1044873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455962227200
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