Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 131 3e-25 seq2 116 6e-21 >seq1 Length=5579133 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || ||||||||||| ||||| | ||| | | Sbjct 2794724 ATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATCCTCT 2794665 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || ||||| || || ||||| || || ||||||||| Sbjct 2794664 GACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAA 2794605 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| ||||| || || |||||| |||| || | ||||| ||| Sbjct 2794604 CAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTACAAT 2794545 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||| | || |||||| | ||| | || |||||||| Sbjct 2794544 ATCCAAAAAGAGTCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGTAT 2794495 Score = 109 bits (120), Expect = 8e-19 Identities = 173/247 (70%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || || || || || | ||| | || | Sbjct 3108881 AATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGGAGTCCTC 3108822 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || ||||| ||||| |||||||| || || |||||||| Sbjct 3108821 TGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTCCTGATCA 3108762 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | |||||||| || || || || ||||| ||| | || || || ||||| || Sbjct 3108761 ACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTGATTACAA 3108702 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 || ||||| || || ||| | || | ||||| ||| | || |||||| ||| || | Sbjct 3108701 CATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGGTGGTAAGAA-GC 3108643 Query 124778 ATAAAAA 124784 |||||| Sbjct 3108642 GTAAAAA 3108636 Score = 107 bits (118), Expect = 3e-18 Identities = 174/249 (70%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| |||| || || || || || || || || | ||| ||||| | Sbjct 3238365 ACGATGCAGATCTTTGTAAAAACCCTTACGGGTAAGACCATTACCCTTGAGGTTGAATCC 3238306 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || ||| ||| | || ||||| |||||||| ||||| || || |||||| Sbjct 3238305 TCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGATAAGGAAGGAATTCCTCCTGAT 3238246 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||| | | || ||||| || || ||| | ||||| | || || || |||||| Sbjct 3238245 CAACAACGTTTGATCTTTGCTGGCAAGCAACTCGAGGACGGACGTACTTTGTCTGATTAT 3238186 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || ||||| || || ||| | || | ||||| ||| | || |||||| ||| || Sbjct 3238185 AACATCCAAAAGGAGTCCACTCTTCACCTCGTTTTGCGTCTTCGTGGTGGTGGTAAGAA- 3238127 Query 124776 TCATAAAAA 124784 | |||||| Sbjct 3238126 GCGTAAAAA 3238118 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || || ||||| || | ||| | || | | Sbjct 3969009 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGTCCTCT 3969068 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||| ||||| || ||||| || || ||||| ||| Sbjct 3969069 GACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTGACCAA 3969128 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| || || ||||| |||||||||||| | || || | || || || Sbjct 3969129 CAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACTACAAC 3969188 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || | ||||| ||| | ||| | || |||||||| Sbjct 3969189 ATTCAAAAGGAGTCTACCCTTCATTTAGTTCTCCGTCTTCGTGGTGGTAT 3969238 Score = 96.9 bits (106), Expect = 5e-15 Identities = 245/363 (67%), Gaps = 16/363 (4%) Strand=Plus/Minus Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| ||| || ||||| | ||| |||||||||| | |||| | || | ||| || Sbjct 3725346 ACATAAAACTGG-CAAAATATATGGCAAGGTGGTAAAGCCATTTCAGGAATAGCTAATGG 3725288 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCA----GGtttattttttattttattta 205675 ||||| |||| | |||||| | | ||| |||||| ||| | || || Sbjct 3725287 GTTCCAAGCTGAAAGAATTATA---CGACGGTCATAAGGGTTTAATTTG-AGGGTAGATA 3725232 Query 205676 tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATT 205735 ||| || | | ||||| | ||||| ||| ||||| | ||||| ||||| ||||| Sbjct 3725231 TAACCTGAGCCAGCTGATCCACTCCTTTATTGGTATAGTCAGTATCGCAATCAACATATT 3725172 Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 || || ||||| | ||||||||||||||| | ||||| | ||||| |||| | || Sbjct 3725171 GCGCTCCGAAATGTCTCCATTGAAAACCATATATAGGACCGAGGTCACCAACTTTACGAT 3725112 Query 205796 CATTAAAACCACGttttttta--tatattttaatgatccattttcatcccaaatatggat 205853 || ||| || | | | || || | || || ||||| ||||||| ||||| || Sbjct 3725111 CAGTAAGCCCTCTGCTGTCTAGGAATTCTCTACTG--CCATTGCCATCCCATATATGAAT 3725054 Query 205854 tcctttattttttaGAATATTTGTATTAGT-TGATCCAGATATAAACCATAATAATTCTT 205912 ||||| | ||| | ||| | |||||| | | | || |||||||| | ||| |||| Sbjct 3725053 CCCTTTTTCACTTAAATGATTGGCATTAGTATCACCGTGA-ATAAACCAAAGTAACTCTT 3724995 Query 205913 CAA 205915 ||| Sbjct 3724994 CAA 3724992 >seq2 Length=4539804 Score = 116 bits (128), Expect = 6e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 ||| ||||| || || | |||||| |||| || || ||||| || | || ||||| | Sbjct 1045570 TACCATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATC 1045511 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 ||||| ||| ||| |||| || ||||| ||||| ||||| || || ||||| Sbjct 1045510 TTCCGATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGA 1045451 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||| | ||||||||||| || || ||| | || ||| | || || | |||||| Sbjct 1045450 TCAACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTA 1045391 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || |||||||| || || ||| | || | ||| | ||| | || || ||||| ||| Sbjct 1045390 CAACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTATGCAAAT 1045331 Query 124775 TT 124776 || Sbjct 1045330 TT 1045329 Score = 109 bits (120), Expect = 8e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || | || |||| | | Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || ||||| ||||| ||||| || || ||||||||| Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| || || ||| | || ||| | || || | |||||| || Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || ||| | ||| | ||| | ||| | || || ||||| ||| || Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1045101 Score = 105 bits (116), Expect = 1e-17 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || | || |||| | | Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || ||||| ||||| ||||| || || ||||||||| Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| || || ||| | || || | || || | |||||| || Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || ||| | ||| | ||| | ||| | || || ||||| ||| || Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1044645 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || | || |||| | | Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || ||||| ||||| ||||| || || ||||||||| Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| || || ||| | || ||| | || || | |||||| || Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 |||||||| || || ||| | || | ||| | ||| | || || ||| || Sbjct 1044474 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTCTT 1044424 Score = 100 bits (110), Expect = 4e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || | || || ||||| || || | || |||| | | Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| || ||||| ||||| ||||| || || ||||||||| Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| || || ||| | || || | || || | |||||| || Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044931 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| || || ||| | || | ||| | ||| | || || ||||| ||| || Sbjct 1044930 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTATGCAAATTT 1044873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455962227200