Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 95.1 1e-14 >seq1 Length=5579133 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| |||||||||||||| || | ||| || |||||| | || |||||| Sbjct 3969205 GTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGCTTTCCA 3969146 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| ||||| || || || ||||| || || ||||||||| ||||| || Sbjct 3969145 GCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTGCTCTTG 3969086 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||||| | | ||| ||||| | ||| | || || ||||||| ||| Sbjct 3969085 ACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGTCAAAGTC 3969026 Query 118722 TTTACAAAAATCTGCATG 118739 || || |||||||||||| Sbjct 3969025 TTGACGAAAATCTGCATG 3969008 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || | ||| | || ||||| ||||| ||||||||||| || ||| || ||| Sbjct 3108668 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATC 3108727 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || |||||| | || ||||| || ||||| ||||| || || || ||||| Sbjct 3108728 TTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTC 3108787 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || | || | ||||| | | ||| ||||| | ||| | ||| Sbjct 3108788 TTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGT 3108847 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || ||||| ||||| Sbjct 3108848 CTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| || |||||||| | ||| || |||||| Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCC 2794575 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| ||||| || | || | || || ||||| ||||| || || |||||||| | Sbjct 2794576 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGA 2794635 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| | | || ||||| | ||| | ||||| Sbjct 2794636 ATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTA 2794695 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| || |||||||||||||| Sbjct 2794696 CCAGTCAAAGTCTTGACAAAAATCTGCAT 2794724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || | ||| | || ||||| ||||| ||||| ||||| || ||| || || Sbjct 3238150 CAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTC 3238209 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||||| || || ||||| |||| | ||| || ||||| ||||| || || ||||| || Sbjct 3238210 CTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATC 3238269 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | ||||| || || | || | ||||| | | || ||||| | ||| | || Sbjct 3238270 TTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGT 3238329 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| |||||||| Sbjct 3238330 CTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 >seq2 Length=4539804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||||||||||||||| | ||| || ||| || || || || ||| Sbjct 1044458 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCA 1044517 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||| || ||||| ||||| ||||| ||||| || ||| || || Sbjct 1044518 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1044577 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| || || | || | ||||| || |||| ||| Sbjct 1044578 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1044637 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 1044638 TTGACAAAAATTTGCAT 1044654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||||||||||||||| | ||| || ||| || || || || ||| Sbjct 1045142 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCA 1045201 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||| || ||||| ||||| ||||| ||||| || ||| || || Sbjct 1045202 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1045261 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| || || | || | ||||| || |||| ||| Sbjct 1045262 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1045321 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 1045322 TTGACAAAAATTTGCAT 1045338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||||||||||||||| | ||| || || || || || || ||| Sbjct 1044686 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCA 1044745 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||| || ||||| ||||| ||||| ||||| || ||| || || Sbjct 1044746 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1044805 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| || || | || | ||||| || |||| ||| Sbjct 1044806 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1044865 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 1044866 TTGACAAAAATTTGCAT 1044882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| ||||||||||||||||| | ||| || || || || || || ||| Sbjct 1044914 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCA 1044973 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || ||||| || ||||| ||||| ||||| ||||| || ||| || || Sbjct 1044974 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1045033 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | ||| || || | || | ||||| || |||| ||| Sbjct 1045034 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1045093 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 1045094 TTGACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830378850768