Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq2 87.8 3e-12 >seq1 Length=5579133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||||| || | ||| || ||||| ||||| ||||| ||| Sbjct 2794498 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAA 2794557 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || || ||||| ||||||||||||| ||| ||||| |||||| Sbjct 2794558 AGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGA 2794617 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || || || Sbjct 2794618 ATTCCTTCCTTGTCCTG 2794634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | || ||||| | ||||| || ||| || || || || || || Sbjct 3969235 CCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 3969177 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||| | || ||| |||||||| |||||||| || || | | ||| || || ||||| Sbjct 3969176 AAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGG 3969117 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 3969116 AATTCCTTCCTTGTCTTG 3969099 >seq2 Length=4539804 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATT 146132 ||||| |||||| || ||| || || || |||||||||||||| | | ||| || | || Sbjct 1045135 ATGTAGAGTAGACTCCTTTTGA-ATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTT 1045193 Query 146133 GTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||||||||| | | ||| ||||| |||||||| ||||| ||||| || Sbjct 1045194 GCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATT 146132 ||||| |||||| || ||| || || || |||||||||||||| | | || || | || Sbjct 1044679 ATGTAGAGTAGACTCCTTTTGA-ATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTT 1044737 Query 146133 GTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||||||||| | | ||| ||||| |||||||| ||||| ||||| || Sbjct 1044738 GCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526362823680