Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 224 9e-54 >seq2 Length=4539804 Score = 224 bits (248), Expect = 9e-54 Identities = 585/880 (66%), Gaps = 13/880 (1%) Strand=Plus/Minus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||| || ||| |||| |||||||||||||||||||||||||| |||| || ||||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATA 16064 |||| ||||| |||||||| || |||||| || || ||||| | | ||| | Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACA 3722737 Query 16065 ATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 16124 | | ||| || |||||||| |||||||| ||| ||||| ||||| || | | Sbjct 3722736 AACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGAC 3722677 Query 16125 TAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATAT 16184 |||| || | || || || || | | ||| || |||| ||| ||||||| || || Sbjct 3722676 TAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATGG 3722617 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAAT 16244 || || || | || || || || ||||||| | ||| ||||| | Sbjct 3722616 CTTCAACAACCTTGCGGCCTGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGT 3722557 Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304 | || | || || || | || || || || || ||||| |||||||| ||||| | Sbjct 3722556 CGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAA 3722497 Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364 |||| ||||| |||| |||||| |||| |||||| || ||||||||||| |||||||| | Sbjct 3722496 GTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTA 3722437 Query 16365 CTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttt 16424 | || ||||| |||||||| || | || || || || | | ||||| Sbjct 3722436 CAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAA 3722377 Query 16425 tagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT-TAAATAAATAA 16483 |||||| || ||||| |||| | | ||| | || |||| |||| | Sbjct 3722376 GAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCT 3722317 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT--ATACATTTCTGAAT 16541 ||||| ||| | | || ||| || ||||| | | ||| | || | || || | Sbjct 3722316 GTTTTTCCTTAGGT-TCACGAATGTATGTATCAAGCA--AAAGTGAGTAGGTCTCAGAGT 3722260 Query 16542 GAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT 16601 ||||||| || || || || |||||||||| || | |||||| | || || |||| Sbjct 3722259 GAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAACTT 3722200 Query 16602 CAGAGTAAAACCTTTCTGCTAAG-TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 ||||| || | || | ||| || || ||||| || ||||| || || ||| | Sbjct 3722199 CAGAGCTGAAACGCTC-GAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAATAG 3722141 Query 16661 GCAAGTA-TGTGTTTAATAAAAtttttttCGTTATC--TGAAAGTTTTA-ACCAGTCAGA 16716 || |||| ||| |||||| | ||| | | | | || | ||| ||| ||| Sbjct 3722140 GCGAGTACAGTG-GAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCAAC 3722082 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 || ||||| || | ||| | || || ||||||||||||| || ||||||| || || Sbjct 3722081 CAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTA 3722022 Query 16777 CATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 | || ||| || || | || ||| ||||||| |||| Sbjct 3722021 GAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACA 3721982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511976874400