Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 1e-40
>seq2
Length=4539804
Score = 181 bits (200), Expect = 1e-40
Identities = 587/902 (65%), Gaps = 21/902 (2%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| |||||||| |||| || ||| |||| | ||||||||||| || ||||| |||
Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017
| | || ||||| ||||| ||||| || ||||| ||| || | || |||
Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753
Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077
|| | | | | || | ||| |||| || |||||||| ||| |||| ||||| |
Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693
Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137
|||||||| | || | || |||| | || || ||||||| || ||| |||
Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633
Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATAT----TTTAGATGTTT 14193
|| || | |||||| | || | || | | | | | || | ||| |
Sbjct 3722632 GCTTCA---ACAATAATGGCTTCAACAACCTT-GCGGCCTGGTCTGTGCTTCAAATGACT 3722577
Query 14194 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 14253
||| || ||||| ||||| || ||||| |||||||| | || ||| | ||| || ||
Sbjct 3722576 AAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGA 3722517
Query 14254 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 14313
||| || | || ||||| | ||| ||||| || | |||||| || | || || |||||
Sbjct 3722516 AAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCC 3722457
Query 14314 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14373
|||||||| || || || || |||||||| || | || || | || | | || |
Sbjct 3722456 AGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGG-TGGAAT 3722398
Query 14374 TTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14432
|| || || |||| |||||| | | ||| |||||| || ||||||||
Sbjct 3722397 CTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTA 3722338
Query 14433 CAATAGCATTAAATAAATGTTCCTTCTCTTTAG-TACTTGAAATGTATGTATCA---ATA 14488
|||||||| || | | | || || |||| | | ||| ||||||||||| | |
Sbjct 3722337 AAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAA-TGTATGTATCAAGCAAA 3722279
Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548
||| || || | |||||||| || ||||| || || || |||||||||| |||
Sbjct 3722278 AGTGAG---TAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAA 3722222
Query 14549 CTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14608
| |||||| | || || || ||| || | ||| | ||| |||||||| |||
Sbjct 3722221 CGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATA 3722162
Query 14609 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG 14668
||||| || || ||| | || | || | ||||||||| | || ||| |
Sbjct 3722161 CCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTT 3722102
Query 14669 AGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725
| || || |||||| | || || || |||||||| | ||| ||| | |||||||||
Sbjct 3722101 AACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAA 3722042
Query 14726 CTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14785
|| |||| || || || | | ||| ||||| | ||| || ||||| | |||
Sbjct 3722041 GATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACA 3721982
Query 14786 AA 14787
||
Sbjct 3721981 AA 3721980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482345575882720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |