Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 >seq2 Length=4539804 Score = 181 bits (200), Expect = 1e-40 Identities = 587/902 (65%), Gaps = 21/902 (2%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || |||||||| |||| || ||| |||| | ||||||||||| || ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 | | || ||||| ||||| ||||| || ||||| ||| || | || ||| Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || | | | | || | ||| |||| || |||||||| ||| |||| ||||| | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 |||||||| | || | || |||| | || || ||||||| || ||| ||| Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATAT----TTTAGATGTTT 14193 || || | |||||| | || | || | | | | | || | ||| | Sbjct 3722632 GCTTCA---ACAATAATGGCTTCAACAACCTT-GCGGCCTGGTCTGTGCTTCAAATGACT 3722577 Query 14194 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 14253 ||| || ||||| ||||| || ||||| |||||||| | || ||| | ||| || || Sbjct 3722576 AAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGA 3722517 Query 14254 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 14313 ||| || | || ||||| | ||| ||||| || | |||||| || | || || ||||| Sbjct 3722516 AAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCC 3722457 Query 14314 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14373 |||||||| || || || || |||||||| || | || || | || | | || | Sbjct 3722456 AGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGG-TGGAAT 3722398 Query 14374 TTTGTTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14432 || || || |||| |||||| | | ||| |||||| || |||||||| Sbjct 3722397 CTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTA 3722338 Query 14433 CAATAGCATTAAATAAATGTTCCTTCTCTTTAG-TACTTGAAATGTATGTATCA---ATA 14488 |||||||| || | | | || || |||| | | ||| ||||||||||| | | Sbjct 3722337 AAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAA-TGTATGTATCAAGCAAA 3722279 Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548 ||| || || | |||||||| || ||||| || || || |||||||||| ||| Sbjct 3722278 AGTGAG---TAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAA 3722222 Query 14549 CTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14608 | |||||| | || || || ||| || | ||| | ||| |||||||| ||| Sbjct 3722221 CGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATA 3722162 Query 14609 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG 14668 ||||| || || ||| | || | || | ||||||||| | || ||| | Sbjct 3722161 CCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTT 3722102 Query 14669 AGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 | || || |||||| | || || || |||||||| | ||| ||| | ||||||||| Sbjct 3722101 AACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAA 3722042 Query 14726 CTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACA 14785 || |||| || || || | | ||| ||||| | ||| || ||||| | ||| Sbjct 3722041 GATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACA 3721982 Query 14786 AA 14787 || Sbjct 3721981 AA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345575882720