Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq1 91.5 1e-13 >seq2 Length=4539804 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || || |||||||||||||| || | Sbjct 1044428 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044487 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| || || ||| | ||||| | ||||||||| || Sbjct 1044488 AGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044547 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||| ||| | ||| || | ||| |||||| | ||| Sbjct 1044548 ATGCCTTCCTTATCCTGAATCTTGCT-CTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044606 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| || ||||| ||||| |||||||||||||| Sbjct 1044607 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || || |||||||||||||| || | Sbjct 1044884 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044943 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | ||| || || ||| | ||||| | ||||||||| || Sbjct 1044944 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045003 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||| ||| | ||| || | ||| |||||| | ||| Sbjct 1045004 ATGCCTTCCTTATCCTGAATCTTGCT-CTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045062 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| || ||||| ||||| |||||||||||||| Sbjct 1045063 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || |||||||||||||| || | Sbjct 1045112 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045171 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| | ||| || || ||| | ||||| | ||||||||| || Sbjct 1045172 AGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045231 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||| ||| | ||| || | ||| |||||| | ||| Sbjct 1045232 ATGCCTTCCTTATCCTGAATCTTGCT-CTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045290 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| || ||||| ||||| |||||||||||||| Sbjct 1045291 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || || || || || |||||||||||||| || | Sbjct 1044656 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044715 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | ||| || || ||| | ||||| | ||||||||| || Sbjct 1044716 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044775 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||||||| ||| ||| | ||| || | ||| |||||| | ||| Sbjct 1044776 ATGCCTTCCTTATCCTGAATCTTGCT-CTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044834 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| || ||||| ||||| |||||||||||||| Sbjct 1044835 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 >seq1 Length=5579133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || || || ||||||||||||||||| | | || | ||| || ||||| Sbjct 3969211 TGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTCTAATTGC 3969152 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC-GGCAATTTG 18241 || || || ||||||| | |||||| || || | |||||||| || | | |||| Sbjct 3969151 TTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGGATTTTG 3969092 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | |||||| | ||| ||||||| || ||| |||| |||||| | || ||||| Sbjct 3969091 CT-CTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTTCCGGT 3969033 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 ||| || || || ||||| ||||| Sbjct 3969032 CAAAGTCTTGACGAAAATCTGCAT 3969009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343981506980