Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq2 89.7 5e-13 >seq1 Length=5579133 Score = 233 bits (258), Expect = 2e-56 Identities = 571/859 (66%), Gaps = 16/859 (2%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || ||||| || || || || || ||||| || | ||| || ||||| || ||||| Sbjct 4228640 GAAGCAAGGTTACAAACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACAC 4228581 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || || || || || || | ||| |||| ||| || || ||||| |||||| Sbjct 4228580 AGGTTTGAGCAGCGAATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCC 4228521 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 || || | |||| | || | || || || || || || | | || || ||| | Sbjct 4228520 TTATACAACATGAAAGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACT 4228461 Query 23207 GTCTGAGCG-----TGAAC-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | ||||| ||||| ||| | |||| || |||||| | ||||||| ||| Sbjct 4228460 TTTTGAGCAGGTAATGAACGACGAC-CACGGTTCT-CCTTCT----CATACTTTTCGTAG 4228407 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | || |||| ||| |||| || || |||| || || | | | || || | | Sbjct 4228406 AGGGCAACAAACTCGTCACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAG 4228347 Query 23321 AGACTCCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | |||| ||| || | |||||| ||| |||||| | || || ||||| | | Sbjct 4228346 AAGGTCCA--TTGCTCGTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGG 4228289 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||||| |||||| ||||| | ||||| ||||| ||||| | || |||| Sbjct 4228288 CATAGAACATTTCGCGTGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAA 4228229 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||||| || || |||||||| ||||| | || | ||||| || || || | ||||| Sbjct 4228228 AGTCCATAACATCGGCATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTAT 4228169 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 | || || || || || ||||| || ||||||||||| || | | ||| || || | | Sbjct 4228168 TACCTCCTTGGTCAACATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTC 4228109 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||||| | || || || | | |||||| |||||| || |||||||| | Sbjct 4228108 CGTTGGAAGTACCATTAGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATAT 4228049 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | ||| || || || | | || || ||||| || || || || |||||||||| Sbjct 4228048 TAATACCAATACCGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGA 4227989 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 | || || || ||| ||||| ||| || | |||||| ||||| | ||| | | Sbjct 4227988 TTCCTTCAATAGAGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAG 4227929 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| |||| ||| || || || || || |||||||| | | ||||| | || Sbjct 4227928 GAGTACCGGCATTGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAAT 4227869 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 |||| || || || || || ||||||||||| ||||| ||||| | |||||| ||||| | Sbjct 4227868 TGTATGTTTCAATAGCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAA 4227809 Query 23859 TCATGTATTGAGGTCTCTC 23877 |||| | ||||| | ||| Sbjct 4227808 TCATATGCTGAGGGCGCTC 4227790 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 || |||| |||||||||||||| || || || || || || ||||| ||| | || || | Sbjct 3108887 AACCAAA-ATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGG 3108829 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | | || |||| | | || | ||||| | ||| ||||| ||||| | || | Sbjct 3108828 AGTCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTC 3108769 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC 31363 | || || || ||||| || |||||||| || ||||| ||||| | | | ||| || Sbjct 3108768 CTGATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGA-TGGACGTACTTTGTCT 3108710 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| || || |||||||| || || Sbjct 3108709 GATTACAACATCCAAAAGGAGTCCACTCTTCACCTCGT 3108672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| |||||||| |||||| |||| || || || |||||| | || || || Sbjct 3969004 CAATCATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGT 3969063 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | | || | ||||| | ||| ||||||||||| | || || | Sbjct 3969064 CCTCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTG 3969123 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||| || ||||| || |||||||| || || || || || ||| | || | Sbjct 3969124 ACCAACAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACT 3969183 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||||||||| || || || |||||| | || || Sbjct 3969184 ACAACATTCAAAAGGAGTCTACCCTTCATTTAGTTCT 3969220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| ||||| || |||||| |||| || ||||| || ||| | || || ||| | Sbjct 2794728 AAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATC 2794669 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | | || | ||||| | || |||||||||||| | || || || Sbjct 2794668 CTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGA 2794609 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || || | || || || || || |||||||| || | ||| | ||||| Sbjct 2794608 TCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTA 2794549 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| || |||||||| |||| || Sbjct 2794548 CAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCT 2794513 >seq2 Length=4539804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| | || || || || || || | || |||||| | || Sbjct 1045567 CATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTC 1045508 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| | | || | || ||| || | || ||| ||||||||| | || || || | Sbjct 1045507 CGATACCATTGACAATGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 1045449 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 | || ||||| || || ||||| || || | ||||| | | | ||| | ||||| Sbjct 1045448 AACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTAC 1045390 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || || |||||||| || || ||| | || | ||||||| Sbjct 1045389 AACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTA 1045338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||| || ||||| || || | || ||||| | || Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || | || ||| ||||||||| | || || || || Sbjct 1044822 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044764 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || ||||| || || | |||||| ||| | ||||| || Sbjct 1044763 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAA 1044704 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || ||||| ||||| || ||| | || | ||||||| Sbjct 1044703 CATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTA 1044654 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||| || ||||| || || | || ||||| | || Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || | || ||| ||||||||| | || || || || Sbjct 1045050 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044992 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || ||||| || || | |||||| ||| | ||||| || Sbjct 1044991 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAA 1044932 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || |||||||| || || ||| | || | ||||||| Sbjct 1044931 CATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTA 1044882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||| || ||||| || || | || ||||| | || Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || | || ||| ||||||||| | || || || || Sbjct 1045278 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1045220 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||||| || || ||||| || || | ||||| | | | ||| | ||||| | Sbjct 1045219 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTACA 1045161 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||| || || ||||| ||||| || ||| | || | ||||||| Sbjct 1045160 ACATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTA 1045110 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||| || ||||| || || | || ||||| | || Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || | || ||| ||||||||| | || || || || Sbjct 1044594 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044536 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || ||||| || || ||||| || || | ||||| | | | ||| | ||||| | Sbjct 1044535 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTACA 1044477 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||| || || |||||||| || || ||| | || | |||||| Sbjct 1044476 ACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGT 1044427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766377711680