Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 233 2e-56
seq2 89.7 5e-13
>seq1
Length=5579133
Score = 233 bits (258), Expect = 2e-56
Identities = 571/859 (66%), Gaps = 16/859 (2%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| ||||| || || || || || ||||| || | ||| || ||||| || |||||
Sbjct 4228640 GAAGCAAGGTTACAAACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACAC 4228581
Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146
|| || || || || || | ||| |||| ||| || || ||||| ||||||
Sbjct 4228580 AGGTTTGAGCAGCGAATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCC 4228521
Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206
|| || | |||| | || | || || || || || || | | || || ||| |
Sbjct 4228520 TTATACAACATGAAAGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACT 4228461
Query 23207 GTCTGAGCG-----TGAAC-ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260
| ||||| ||||| ||| | |||| || |||||| | ||||||| |||
Sbjct 4228460 TTTTGAGCAGGTAATGAACGACGAC-CACGGTTCT-CCTTCT----CATACTTTTCGTAG 4228407
Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320
| || |||| ||| |||| || || |||| || || | | | || || | |
Sbjct 4228406 AGGGCAACAAACTCGTCACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAG 4228347
Query 23321 AGACTCCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378
| |||| ||| || | |||||| ||| |||||| | || || ||||| | |
Sbjct 4228346 AAGGTCCA--TTGCTCGTTACGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGG 4228289
Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438
| ||||||| |||||| ||||| | ||||| ||||| ||||| | || ||||
Sbjct 4228288 CATAGAACATTTCGCGTGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAA 4228229
Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498
|||||| || || |||||||| ||||| | || | ||||| || || || | |||||
Sbjct 4228228 AGTCCATAACATCGGCATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTAT 4228169
Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558
| || || || || || ||||| || ||||||||||| || | | ||| || || | |
Sbjct 4228168 TACCTCCTTGGTCAACATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTC 4228109
Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618
||||||| | || || || | | |||||| |||||| || |||||||| |
Sbjct 4228108 CGTTGGAAGTACCATTAGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATAT 4228049
Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678
| ||| || || || | | || || ||||| || || || || ||||||||||
Sbjct 4228048 TAATACCAATACCGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGA 4227989
Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738
| || || || ||| ||||| ||| || | |||||| ||||| | ||| | |
Sbjct 4227988 TTCCTTCAATAGAGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAG 4227929
Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798
| ||| |||| ||| || || || || || |||||||| | | ||||| | ||
Sbjct 4227928 GAGTACCGGCATTGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAAT 4227869
Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858
|||| || || || || || ||||||||||| ||||| ||||| | |||||| ||||| |
Sbjct 4227868 TGTATGTTTCAATAGCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAA 4227809
Query 23859 TCATGTATTGAGGTCTCTC 23877
|||| | ||||| | |||
Sbjct 4227808 TCATATGCTGAGGGCGCTC 4227790
Score = 98.7 bits (108), Expect = 9e-16
Identities = 155/218 (71%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244
|| |||| |||||||||||||| || || || || || || ||||| ||| | || || |
Sbjct 3108887 AACCAAA-ATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGG 3108829
Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304
| | || |||| | | || | ||||| | ||| ||||| ||||| | || |
Sbjct 3108828 AGTCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTC 3108769
Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC 31363
| || || || ||||| || |||||||| || ||||| ||||| | | | ||| ||
Sbjct 3108768 CTGATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGA-TGGACGTACTTTGTCT 3108710
Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
||||| ||||| ||||| || || |||||||| || ||
Sbjct 3108709 GATTACAACATCCAAAAGGAGTCCACTCTTCACCTCGT 3108672
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| |||||||| |||||| |||| || || || |||||| | || || ||
Sbjct 3969004 CAATCATGCAGATTTTCGTCAAGACTTTGACCGGAAAGACTATCACCCTTGAGGTGGAGT 3969063
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| | | || | ||||| | ||| ||||||||||| | || || |
Sbjct 3969064 CCTCTGACACTATTGACAATGTCAAGAGCAAAATCCAAGACAAGGAAGGAATTCCTCCTG 3969123
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||| || ||||| || |||||||| || || || || || ||| | || |
Sbjct 3969124 ACCAACAACGTCTTATCTTCGCTGGAAAGCAATTAGAGGATGGCCGTACTCTTTCTGACT 3969183
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||||||||| || || || |||||| | || ||
Sbjct 3969184 ACAACATTCAAAAGGAGTCTACCCTTCATTTAGTTCT 3969220
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| ||||| || |||||| |||| || ||||| || ||| | || || ||| |
Sbjct 2794728 AAAGATGCAGATTTTTGTCAAGACTTTGACTGGTAAAACTATAACCCTAGAGGTGGAATC 2794669
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| |||| | | || | ||||| | || |||||||||||| | || || ||
Sbjct 2794668 CTCTGACACTATTGACAATGTCAAGAGTAAGATTCAGGACAAGGAAGGAATTCCTCCTGA 2794609
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368
|| || || | || || || || || |||||||| || | ||| | |||||
Sbjct 2794608 TCAACAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGATTA 2794549
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || |||||||| || |||||||| |||| ||
Sbjct 2794548 CAATATCCAAAAAGAGTCCACTCTTCACTTGGTTCT 2794513
>seq2
Length=4539804
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| | || || || || || || | || |||||| | ||
Sbjct 1045567 CATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTC 1045508
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
||| | | || | || ||| || | || ||| ||||||||| | || || || |
Sbjct 1045507 CGATACCATTGACAATGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATC 1045449
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369
| || ||||| || || ||||| || || | ||||| | | | ||| | |||||
Sbjct 1045448 AACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTAC 1045390
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||||| || || |||||||| || || ||| | || | |||||||
Sbjct 1045389 AACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTA 1045338
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || |||| || ||||| || || | || ||||| | ||
Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || ||| || | || ||| ||||||||| | || || || ||
Sbjct 1044822 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044764
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| ||||| || || ||||| || || | |||||| ||| | ||||| ||
Sbjct 1044763 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAA 1044704
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||| || || ||||| ||||| || ||| | || | |||||||
Sbjct 1044703 CATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTA 1044654
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || |||| || ||||| || || | || ||||| | ||
Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || ||| || | || ||| ||||||||| | || || || ||
Sbjct 1045050 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044992
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|| ||||| || || ||||| || || | |||||| ||| | ||||| ||
Sbjct 1044991 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAA 1044932
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||| || || |||||||| || || ||| | || | |||||||
Sbjct 1044931 CATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGTA 1044882
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || |||| || ||||| || || | || ||||| | ||
Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || ||| || | || ||| ||||||||| | || || || ||
Sbjct 1045278 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1045220
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|| ||||| || || ||||| || || | ||||| | | | ||| | ||||| |
Sbjct 1045219 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTACA 1045161
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||||| || || ||||| ||||| || ||| | || | |||||||
Sbjct 1045160 ACATTCAAAAGGAGTCTACTCTACATCTTGTTCTTCGTCTTCGTGGCGGTA 1045110
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || |||| || ||||| || || | || ||||| | ||
Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | || ||| || | || ||| ||||||||| | || || || ||
Sbjct 1044594 GACACCATTGATAACGT-AAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCA 1044536
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|| ||||| || || ||||| || || | ||||| | | | ||| | ||||| |
Sbjct 1044535 ACAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGA-TGGACGTACTCTTTCAGATTACA 1044477
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||||||| || || |||||||| || || ||| | || | ||||||
Sbjct 1044476 ACATTCAAAAGGAGTCTACTCTTCACCTTGTTCTTCGTCTTCGTGGCGGT 1044427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445766377711680
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