Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 143 5e-29 seq1 107 4e-18 >seq2 Length=4539804 Score = 143 bits (158), Expect = 5e-29 Identities = 302/444 (68%), Gaps = 15/444 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || ||||| ||||||||| ||| | || || || ||||| ||| Sbjct 3722421 GTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGG 3722480 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | || || |||||||||| || | |||||||| || |||| | | || Sbjct 3722481 CTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGAT 3722540 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || |||||||| ||||||||| || || |||| | || | |||| | | Sbjct 3722541 GAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTA------GTCAT-TTGAAGCACAG 3722593 Query 102098 TCAAG--AGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 | || | |||| || ||||| ||| | |||||| || ||||| |||||| Sbjct 3722594 ACCAGGCCGCAAGG-TTGTTGAAGCCATTATTGTTGAAGCTGTTGATATTGAGAAAGAAT 3722652 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 |||| | | || || |||| | | || ||||| | |||||| | |||| Sbjct 3722653 ACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTGATGTGTCAGT 3722712 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272 | ||||||||||| || ||| | ||||||| |||| || ||| ||||||| | Sbjct 3722713 ATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGCAATGACAAGTACTATAACG 3722772 Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAATAAGACCAACTTTTTT 102331 | ||||| || ||| |||||||| ||||| || | | || | || || || || ||| Sbjct 3722773 TAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGCAGGA-AAAACAAATTTCTTT 3722831 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||| ||| | || || ||| Sbjct 3722832 GAAAAGAAAGTTTCTGACTACCAA 3722855 >seq1 Length=5579133 Score = 107 bits (118), Expect = 4e-18 Identities = 173/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| ||||||||||| || || | ||| || || || || || || ||||| Sbjct 4228037 CCGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATA 4227978 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || |||| | | ||||| || || || |||||||| || || | Sbjct 4227977 GAGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCA 4227918 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || || || || || |||||||||||||| ||| | ||||| | || ||||||||| Sbjct 4227917 TTGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCA 4227858 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 || ||| || ||||| ||||| || || || || |||||||||||||| | |||| Sbjct 4227857 ATAGCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAATCATATGCTGA 4227798 Query 95032 GGGCGCTCA 95040 ||||||||| Sbjct 4227797 GGGCGCTCA 4227789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583949283820