Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 5e-29
seq1 107 4e-18
>seq2
Length=4539804
Score = 143 bits (158), Expect = 5e-29
Identities = 302/444 (68%), Gaps = 15/444 (3%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| || ||||| ||||||||| ||| | || || || ||||| |||
Sbjct 3722421 GTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGTTTGCCTCTATTTTTTGG 3722480
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| | || || |||||||||| || | |||||||| || |||| | | ||
Sbjct 3722481 CTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATGAATTGATTTGTCGTGAT 3722540
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| |||||||| ||||||||| || || |||| | || | |||| | |
Sbjct 3722541 GAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTA------GTCAT-TTGAAGCACAG 3722593
Query 102098 TCAAG--AGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
| || | |||| || ||||| ||| | |||||| || ||||| ||||||
Sbjct 3722594 ACCAGGCCGCAAGG-TTGTTGAAGCCATTATTGTTGAAGCTGTTGATATTGAGAAAGAAT 3722652
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
|||| | | || || |||| | | || ||||| | |||||| | ||||
Sbjct 3722653 ACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTGATGTGTCAGT 3722712
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATG 102272
| ||||||||||| || ||| | ||||||| |||| || ||| ||||||| |
Sbjct 3722713 ATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGCAATGACAAGTACTATAACG 3722772
Query 102273 TTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCG-AGAATAAGACCAACTTTTTT 102331
| ||||| || ||| |||||||| ||||| || | | || | || || || || |||
Sbjct 3722773 TAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGCAGGA-AAAACAAATTTCTTT 3722831
Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355
||||||| ||| | || || |||
Sbjct 3722832 GAAAAGAAAGTTTCTGACTACCAA 3722855
>seq1
Length=5579133
Score = 107 bits (118), Expect = 4e-18
Identities = 173/249 (69%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| ||||| ||||||||||| || || | ||| || || || || || || |||||
Sbjct 4228037 CCGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATA 4227978
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911
|| |||| | | ||||| || || || |||||||| || || |
Sbjct 4227977 GAGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCA 4227918
Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971
|| || || || || |||||||||||||| ||| | ||||| | || |||||||||
Sbjct 4227917 TTGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCA 4227858
Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031
|| ||| || ||||| ||||| || || || || |||||||||||||| | ||||
Sbjct 4227857 ATAGCAGCTTCAATGTCCTCACCGTGGATACCAACGGCGACACGCATAATCATATGCTGA 4227798
Query 95032 GGGCGCTCA 95040
|||||||||
Sbjct 4227797 GGGCGCTCA 4227789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583949283820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |