Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 316 3e-81 seq2 219 5e-52 >seq1 Length=5579133 Score = 316 bits (350), Expect = 3e-81 Identities = 1402/2200 (64%), Gaps = 49/2200 (2%) Strand=Plus/Minus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| |||||||||||||| || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 62256 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 62312 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 62313 ACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62372 | | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 62373 AGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62432 || || || || | ||||||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 62433 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62492 ||||| || || | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 62493 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 ||||| || || ||| ||| | || |||| | | || || || || | | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 62553 CAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| ||||||||| | || ||| ||| |||| |||||| ||| Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981 Query 62613 GCGTAC----GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACT 62668 | | | |||||| |||| | ||||||| || || || || | | ||| Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 62669 CGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTT 62727 ||||| | || ||| ||||| ||||| ||||| | | ||||| | |||| || Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTG-GCAC 4228862 Query 62728 CCGGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACC 62785 | | || ||||| ||| ||||| || ||| || || || | ||||||||||| Sbjct 4228861 CTGCAGATTCGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACACC 4228804 Query 62786 AATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAAT 62844 | ||| | || | ||| | | |||| | | | |||||| |||| ||||||||| | Sbjct 4228803 CAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAGT 4228745 Query 62845 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| || ||||| || ||||| || | || || || || ||||| | || || Sbjct 4228744 TAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTTT 4228685 Query 62905 GAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACA 62964 | |||| | || ||| | | ||| || ||| ||||| || || || ||||| | Sbjct 4228684 GGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAA 4228625 Query 62965 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 63024 | || || || | || | | |||| | |||||||| || || || || | Sbjct 4228624 CAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAA 4228565 Query 63025 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63084 |||| || | ||| | ||||| ||| ||| || | ||||||||| | ||||| | Sbjct 4228564 TAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAG 4228505 Query 63085 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 63144 || |||||||||||| || |||| | ||| || | ||| || | |||| || | Sbjct 4228504 GATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATG 4228445 Query 63145 TA----GATTT-GTATCTCCTTTCTC-----TTTCGTATAGAGTATACAATCGTTCGAAC 63194 | || | ||||||| ||| ||||||| || | | |||| || Sbjct 4228444 AACGACGACCACGGTTCTCCTT-CTCATACTTTTCGTAGAGGGCA-ACAA--------AC 4228395 Query 63195 TCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCT 63254 ||||| |||||||||| |||| | ||| |||| || || | || | ||| | Sbjct 4228394 TCGTCACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGC 4228335 Query 63255 CCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGAT 63312 ||| | | |||| | |||| |||||| | ||||||||||| | || ||| || | | Sbjct 4228334 TCGTTA-CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGAACATTT 4228277 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 | | || | |||||||| || | ||||| ||| || | || |||||| || Sbjct 4228276 CGCGTGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACAT 4228217 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | | |||||| || ||||| || || | | ||||| || || || ||||| || | Sbjct 4228216 CGGCATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGT 4228157 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | || | ||| ||||| || ||||| | | ||| || | ||| ||||| || ||| Sbjct 4228156 CAACATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTAC 4228097 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTC 63552 |||| || || | ||||| || | || | ||| || ||| | ||| || | Sbjct 4228096 CATTAGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATAC 4228037 Query 63553 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGC 63612 | || || | || ||||| | || || || | ||||| ||||| ||||| || Sbjct 4228036 CGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAG 4227977 Query 63613 TATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCAT 63672 || || |||| ||| || ||||| ||| | |||| |||||| ||| || |||| Sbjct 4227976 AGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCAT 4227917 Query 63673 TAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63732 | || | || || ||||| || ||||| | || ||| | | |||||| || |||| Sbjct 4227916 TGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAA 4227857 Query 63733 TAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 |||| | || || ||| || | || || || || ||||||||||| | ||| |||||| Sbjct 4227856 TAGCAGCTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGA 4227798 Query 63792 GGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 || | ||| ||| |||| || || ||| || || || || ||||| || || Sbjct 4227797 GGGCGCTCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAG 4227738 Query 63852 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTA 63911 ||||| | ||||| | || || || ||||| || ||| | || | | ||||| Sbjct 4227737 CCAAAGAAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTG 4227678 Query 63912 TATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA 63971 | ||| | || ||||| | | | || || || || | | | || | |||| Sbjct 4227677 TGTTTCATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTG 4227618 Query 63972 GGATTAACATAGT--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCT 64029 ||||| ||||||| |||| | | || || | ||| | || | |||| || Sbjct 4227617 GGATTTACATAGTCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCT 4227560 Query 64030 TGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAG 64089 | || | || || | || ||||| || || | ||| |||||||| ||||| | ||||| Sbjct 4227559 TATGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAG 4227500 Query 64090 TACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTAT 64149 | ||| || || |||| || || | | | |||||||| | || || || || || Sbjct 4227499 TCATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGAT 4227440 Query 64150 ATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGC 64209 | | || ||| || || || |||| | ||||| | |||||| | | | || Sbjct 4227439 ACACACCAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGC 4227380 Query 64210 CATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAA 64249 |||| || | | || ||||| |||||||| ||||| Sbjct 4227379 CATAACAAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 219 bits (242), Expect = 5e-52 Identities = 594/902 (66%), Gaps = 24/902 (3%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 |||||||| || ||||||| ||| || ||||| || ||||| ||||||||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 | || || ||||| ||||||||||| || |||||||| || || || || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 ||||| || | ||| | ||| || || ||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || | || |||| |||||||| | || | |||||| ||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCA--CT--CGG--TGGA-TGTAAT--AAA 33566 || | || || ||| || ||| || || ||| ||| ||| | ||| Sbjct 3722632 GCTTC------AACAA---TAATGGCTTCAACAACCTTGCGGCCTGGTCTGTGCTTCAAA 3722582 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 || ||||||||||||| || || ||| ||| |||||||| || | || ||| ||||| Sbjct 3722581 TGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCA 3722522 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || ||||| || || || ||||| || ||||| || ||||||||||| || || || || Sbjct 3722521 TTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAAC 3722462 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 ||||| ||||||||||| |||||||| ||||||||||||| | | | |||| | Sbjct 3722461 GATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTG 3722402 Query 33747 G---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 | | |||| ||||| ||||||| | ||| || || | | || ||| Sbjct 3722401 GAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATT 3722342 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||| || |||| || || | |||||| ||| || || || ||||| | | Sbjct 3722341 GTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGC 3722282 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 ||||| || | || || ||||| |||||||| || || || || || | ||| Sbjct 3722281 AAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAA 3722222 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | ||| || | ||||| ||||| | | || || || | ||| ||||| || || Sbjct 3722221 CGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATA 3722162 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 ||||| || || ||| | || | |||| ||||| || ||| || | || Sbjct 3722161 CCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTT 3722102 Query 34044 A---GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100 | |||| ||||||| | ||||| || | ||| | ||| || | |||||||| Sbjct 3722101 AACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAA 3722042 Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 ||||| || ||||| || || | | ||| || || ||||| | ||||| || | |||| Sbjct 3722041 GATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACA 3721982 Query 34161 AA 34162 || Sbjct 3721981 AA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817568509120