Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 138 1e-27 seq1 127 2e-24 >seq2 Length=4539804 Score = 138 bits (152), Expect = 1e-27 Identities = 551/859 (64%), Gaps = 14/859 (2%) Strand=Plus/Minus Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421 ||| || ||||| || || ||| ||| || |||| |||||| || |||||||| Sbjct 3722834 TTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGT 3722775 Query 11422 TACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTAT 11481 ||| || || || ||| || || | || || | ||| || || ||||| || Sbjct 3722774 TACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAAT 3722715 Query 11482 ATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAA 11541 ||||||| |||| ||| ||||||||| | ||| || |||| ||| | || || Sbjct 3722714 ATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAA 3722655 Query 11542 AAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG 11601 | || || || |||| ||| || |||| || || | | ||| |||| Sbjct 3722654 GTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGC---TTCAACAACCTTGCGGCC 3722598 Query 11602 TGGA-TGTAAT--AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTC 11658 ||| ||| | ||||| ||||||| ||||| ||||| || || | ||| || || Sbjct 3722597 TGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATC 3722538 Query 11659 TCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCA 11718 | || || | |||||| ||||| || | || ||||| | ||| ||||| || | ||| Sbjct 3722537 ACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCA 3722478 Query 11719 AAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC 11778 ||| |||| ||||| || ||||||||||| || || || ||||| ||||| || || | Sbjct 3722477 AAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAA 3722418 Query 11779 TCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835 | | |||| | | || | | ||||| ||||| | ||||| Sbjct 3722417 ACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGC 3722358 Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCT 11895 || | | |||||||| ||||| | || | || |||||| || || | Sbjct 3722357 CTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACG 3722298 Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955 | |||||||| | || | || | || || ||||||||||| || ||||| Sbjct 3722297 AATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTG 3722238 Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTA 12014 || ||||| | ||| || || || | ||| || || | | ||| | || | Sbjct 3722237 GAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAA-CGCTCGAGAA 3722179 Query 12015 AATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 ||||||||| ||||||||||| | || ||| | || |||| | ||||||| Sbjct 3722178 GATTCTCATTAACAATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGT 3722119 Query 12075 ATTTTTCGTCTTTAGTTAA---TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131 | ||| || | |||| |||||||||||| | || ||||| || | ||| | || Sbjct 3722118 AACGTTCATCAGCATTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTT 3722059 Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACT 12191 | ||| | ||||||||| ||| | | | || || | || ||| || || ||||||| Sbjct 3722058 CCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACT 3721999 Query 12192 TAATAGGGAAAATAACGAA 12210 |||| || || | ||| || Sbjct 3721998 TAATTGGAAACAAAACAAA 3721980 >seq1 Length=5579133 Score = 127 bits (140), Expect = 2e-24 Identities = 413/637 (65%), Gaps = 7/637 (1%) Strand=Plus/Minus Query 36834 ATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT 36893 ||| ||||||||||| || || ||| |||| || ||||| |||||||| || | ||| Sbjct 4229508 ATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTAGTAATTTT 4229449 Query 36894 TGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACC 36953 | |||| | ||||| | | | || ||| ||| |||||| || || | || Sbjct 4229448 TCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATGAATGGGCC 4229389 Query 36954 TCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATAT 37013 | |||||| || || | || | |||||| |||||||| || ||||| || | Sbjct 4229388 ACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTTTTGTAAAG 4229329 Query 37014 TTGTTTTATATTATCTGGTAAATCTA-AATG--TTGAATAGAACCATTATGTAACACAAT 37070 | || | | | || | || ||| ||| || || |||| | | | |||| Sbjct 4229328 ATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGCATAACAAG 4229269 Query 37071 TGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGG 37130 | | ||||| ||||| | |||||||| || | | || || |||| || ||| Sbjct 4229268 TTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAACAGCCATGG 4229209 Query 37131 ATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGG 37190 ||| |||| || || || ||||| | || | | | || || || ||||||||| Sbjct 4229208 ATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAAGTATATGG 4229149 Query 37191 TTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT 37250 |||| ||||||| || | ||||||||||| || ||||||||||||||||||| Sbjct 4229148 CTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATTGGTGCTAC 4229089 Query 37251 TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCA 37310 || | ||| | | ||| ||| || ||| | | || | || ||||||||| Sbjct 4229088 TAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCCCAATCCCA 4229029 Query 37311 TAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 | ||| || || || | || |||||| ||||| |||| |||||| | || ||| Sbjct 4229028 AAGATCGGTGGGATTAACGTT--CCACATGTCATACTGTAAAATACCCTGGGATGCAGGA 4228971 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428 || | | ||| ||||||| | || | | | || | |||||| | || || Sbjct 4228970 GATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGCCTCAAGG 4228911 Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465 || || | || ||||||||||| ||||| || |||| Sbjct 4228910 GCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTA 4228874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524776573760