Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 1e-27
seq1 127 2e-24
>seq2
Length=4539804
Score = 138 bits (152), Expect = 1e-27
Identities = 551/859 (64%), Gaps = 14/859 (2%)
Strand=Plus/Minus
Query 11362 TTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATA 11421
||| || ||||| || || ||| ||| || |||| |||||| || ||||||||
Sbjct 3722834 TTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGT 3722775
Query 11422 TACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTAT 11481
||| || || || ||| || || | || || | ||| || || ||||| ||
Sbjct 3722774 TACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCAAT 3722715
Query 11482 ATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAA 11541
||||||| |||| ||| ||||||||| | ||| || |||| ||| | || ||
Sbjct 3722714 ATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAA 3722655
Query 11542 AAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG 11601
| || || || |||| ||| || |||| || || | | ||| ||||
Sbjct 3722654 GTATTCTTTCTCAATATCAACAGCTTCAACAATAATGGC---TTCAACAACCTTGCGGCC 3722598
Query 11602 TGGA-TGTAAT--AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTC 11658
||| ||| | ||||| ||||||| ||||| ||||| || || | ||| || ||
Sbjct 3722597 TGGTCTGTGCTTCAAATGACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATC 3722538
Query 11659 TCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCA 11718
| || || | |||||| ||||| || | || ||||| | ||| ||||| || | |||
Sbjct 3722537 ACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCA 3722478
Query 11719 AAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC 11778
||| |||| ||||| || ||||||||||| || || || ||||| ||||| || || |
Sbjct 3722477 AAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAA 3722418
Query 11779 TCTTTCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835
| | |||| | | || | | ||||| ||||| | |||||
Sbjct 3722417 ACGAATTGCATAGGTGGAATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGC 3722358
Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCT 11895
|| | | |||||||| ||||| | || | || |||||| || || |
Sbjct 3722357 CTTAATAGAACCCATTGTTAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACG 3722298
Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955
| |||||||| | || | || | || || ||||||||||| || |||||
Sbjct 3722297 AATGTATGTATCAAGCAAAAGTGAGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTG 3722238
Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTA 12014
|| ||||| | ||| || || || | ||| || || | | ||| | || |
Sbjct 3722237 GAAACCATAAACACAACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAA-CGCTCGAGAA 3722179
Query 12015 AATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074
||||||||| ||||||||||| | || ||| | || |||| | |||||||
Sbjct 3722178 GATTCTCATTAACAATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGT 3722119
Query 12075 ATTTTTCGTCTTTAGTTAA---TTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131
| ||| || | |||| |||||||||||| | || ||||| || | ||| | ||
Sbjct 3722118 AACGTTCATCAGCATTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTT 3722059
Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACT 12191
| ||| | ||||||||| ||| | | | || || | || ||| || || |||||||
Sbjct 3722058 CCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACT 3721999
Query 12192 TAATAGGGAAAATAACGAA 12210
|||| || || | ||| ||
Sbjct 3721998 TAATTGGAAACAAAACAAA 3721980
>seq1
Length=5579133
Score = 127 bits (140), Expect = 2e-24
Identities = 413/637 (65%), Gaps = 7/637 (1%)
Strand=Plus/Minus
Query 36834 ATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTT 36893
||| ||||||||||| || || ||| |||| || ||||| |||||||| || | |||
Sbjct 4229508 ATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTAGTAATTTT 4229449
Query 36894 TGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACC 36953
| |||| | ||||| | | | || ||| ||| |||||| || || | ||
Sbjct 4229448 TCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATGAATGGGCC 4229389
Query 36954 TCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATAT 37013
| |||||| || || | || | |||||| |||||||| || ||||| || |
Sbjct 4229388 ACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTTTTGTAAAG 4229329
Query 37014 TTGTTTTATATTATCTGGTAAATCTA-AATG--TTGAATAGAACCATTATGTAACACAAT 37070
| || | | | || | || ||| ||| || || |||| | | | ||||
Sbjct 4229328 ATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGCATAACAAG 4229269
Query 37071 TGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGG 37130
| | ||||| ||||| | |||||||| || | | || || |||| || |||
Sbjct 4229268 TTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAACAGCCATGG 4229209
Query 37131 ATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGG 37190
||| |||| || || || ||||| | || | | | || || || |||||||||
Sbjct 4229208 ATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAAGTATATGG 4229149
Query 37191 TTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT 37250
|||| ||||||| || | ||||||||||| || |||||||||||||||||||
Sbjct 4229148 CTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATTGGTGCTAC 4229089
Query 37251 TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCA 37310
|| | ||| | | ||| ||| || ||| | | || | || |||||||||
Sbjct 4229088 TAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCCCAATCCCA 4229029
Query 37311 TAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368
| ||| || || || | || |||||| ||||| |||| |||||| | || |||
Sbjct 4229028 AAGATCGGTGGGATTAACGTT--CCACATGTCATACTGTAAAATACCCTGGGATGCAGGA 4228971
Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428
|| | | ||| ||||||| | || | | | || | |||||| | || ||
Sbjct 4228970 GATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGCCTCAAGG 4228911
Query 37429 GCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465
|| || | || ||||||||||| ||||| || ||||
Sbjct 4228910 GCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTA 4228874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524776573760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |