Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 293 3e-74 seq2 262 5e-65 >seq1 Length=5579133 Score = 293 bits (324), Expect = 3e-74 Identities = 1395/2195 (64%), Gaps = 39/2195 (2%) Strand=Plus/Minus Query 64869 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 64928 ||||| |||||||||||||| || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 64929 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 64988 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 64989 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 65048 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 65049 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 65105 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 65106 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 65165 | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 65166 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 65225 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 65226 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 65285 ||||| || || | | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 65286 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 65345 ||||| || || ||| ||| | || |||| | | || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 65346 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 65405 |||| ||||||||| | || ||| |||| |||||| ||| Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981 Query 65406 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 65461 | | | |||||| |||| | || |||| || || || || | || ||| Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 65462 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTG-CT 65519 ||||| | || ||| ||||| ||||||||||| | | ||||| | |||| | Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861 Query 65520 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACAC 65577 | ||| | | ||||| ||| ||||| || ||| || || || | |||||||||| Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805 Query 65578 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 65636 | | ||| | || | ||| | | |||| | | | |||||| |||| ||||||||| Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746 Query 65637 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAG-TTT 65695 |||| || ||||| || ||||| || | || || || || ||||| | || ||| Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686 Query 65696 GAGAAAATCAAATCGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACA 65755 |||| | | | | | ||| | | ||| || ||| ||||| || || || ||||| Sbjct 4228685 TGGAAATTGTACTTTC-CGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACA 4228627 Query 65756 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 65815 ||| || || || | || | | |||| | |||||||| || || || || Sbjct 4228626 AACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCG 4228567 Query 65816 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 65875 || || || | ||| | ||||| ||| ||| || | ||||||||| | ||||| Sbjct 4228566 AATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAA 4228507 Query 65876 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 65935 ||| |||||||||||| || |||| | ||| || | ||| || | |||| || Sbjct 4228506 AGGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA- 4228448 Query 65936 TATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATCGTTCGAACTCGTCT 65993 || | | | | ||||| ||| ||| | | || | | |||||||| Sbjct 4228447 -ATGAACGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCA 4228389 Query 65994 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 66053 |||||||||| |||| || ||| |||| || || | || | ||| | ||| | Sbjct 4228388 CCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTA 4228329 Query 66054 TCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGT 66112 | |||| | |||| |||||| | ||||||||||| | || ||| | | || || || Sbjct 4228328 -CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGT 4228272 Query 66113 TCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAA 66170 | | |||||||| || | ||||| ||| || | || |||||| ||| | Sbjct 4228271 GCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCA 4228212 Query 66171 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 66230 ||||| || ||||| || || | | ||||| || || || ||||| || || | Sbjct 4228211 TGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACA 4228152 Query 66231 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 66290 || | ||| ||||| || ||||| | | ||| || | ||| || ||||| |||||||| Sbjct 4228151 TAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTA 4228092 Query 66291 GTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCT 66350 || || | ||||| || |||| | ||| || ||| | ||| || || || Sbjct 4228091 GTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCA 4228032 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | || ||||| | || || || | || || ||||| || || ||| || Sbjct 4228031 GCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCG 4227972 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 || |||| ||| || ||||| ||| | |||| ||||| ||| || ||||| || Sbjct 4227971 TCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAA 4227912 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 66530 | || || ||||| || ||||| | || ||| | | |||||| || |||||||| Sbjct 4227911 AGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCA 4227852 Query 66531 GAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589 | || || ||| || | || || || || ||||||||||| | ||| |||||||| | Sbjct 4227851 GCTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCG 4227793 Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 ||| | | ||| || || ||| || || || || ||||| || || ||||| Sbjct 4227792 CTCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAA 4227733 Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||||| | || || || ||||| || ||| | | | || ||||| | ||| Sbjct 4227732 GAAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTT 4227673 Query 66710 GTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATT 66769 | || | ||| | | | || || || || | | | || | |||| ||||| Sbjct 4227672 CATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATT 4227613 Query 66770 GACATAGT--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGT 66827 ||||||| |||| | | || || | ||| | || | |||| || || Sbjct 4227612 TACATAGTCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTATGC 4227555 Query 66828 AGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAA 66887 | || || || || |||||||| || | ||| |||||||| ||||| | |||||| | Sbjct 4227554 AAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATA 4227495 Query 66888 GTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATT 66947 || || || |||| || || | | | |||||||| | || || || || ||| | Sbjct 4227494 GTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACA 4227435 Query 66948 CCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAA 67007 || || || || || |||| | ||||| | |||||| | | | ||||||| Sbjct 4227434 CCAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAA 4227375 Query 67008 CATAATTTTCTAATACGAGATGTGATTTTATCAAA 67042 || | | || ||||| |||||||| ||||| Sbjct 4227374 CAAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 262 bits (290), Expect = 5e-65 Identities = 599/895 (67%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 |||||||| || ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||| || ||||| |||||||||||||| |||||| | || ||||| || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 ||||| || | ||| | ||| || |||||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || | || |||| |||||||| | || | |||||| |||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 36092 GCGTCTGTTATAATAGATATTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTAA 36149 || || ||||| | | || || | | || ||| | | ||||| ||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||||||| || || ||| ||| |||||||| || | || ||| ||||| ||||||| Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 | || || || ||||| || ||||| || ||||||||||| || || ||||| ||||||| Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CT- 36327 ||||||| || |||||||| || |||||||||| | | | |||| || | || Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395 Query 36328 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 |||| ||||| ||||||| | ||| || || | | || |||||| | Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 |||||| || || | |||||| ||| || || |||||||||| |||||| Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 || | || || ||||| |||||||| ||||| || || || | ||| | ||| | Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 36566 | | ||||| ||||| | | || || || | ||| ||||| || || || || Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155 Query 36567 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTT 36623 || || ||| | || | |||| ||||| || ||| | | ||| | Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 ||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| | Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035 Query 36684 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | ||||| || || | | ||| || || ||||| | ||||||||| | |||||| Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172767091360