Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2 152 4e-32 >seq2 Length=4539804 Score = 152 bits (168), Expect = 4e-32 Identities = 293/431 (68%), Gaps = 1/431 (0%) Strand=Plus/Plus Query 22730 CTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCAT 22789 |||| |||| ||| | | |||||||| ||||| ||||| || | |||||||| || | Sbjct 3722405 CTAT-GCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTGGATCGT 3722463 Query 22790 TTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACG 22849 |||| | || || ||||| ||||||||| || ||||| || | | |||||||| | Sbjct 3722464 TTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTTCCAATG 3722523 Query 22850 AGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAA 22909 | |||||| | ||||| || ||||| ||| |||||||| ||| || ||||||| || Sbjct 3722524 AATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTAGTCATT 3722583 Query 22910 TGGCAAACAAACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTG 22969 || ||| ||| | | | | || | || || ||| || ||||| |||| Sbjct 3722584 TGAAGCACAGACCAGGCCGCAAGGTTGTTGAAGCCATTATTGTTGAAGCTGTTGATATTG 3722643 Query 22970 AGACGGCTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTA 23029 ||| | | |||| || || || || ||||||||||||| || | Sbjct 3722644 AGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAATAAGGATTTGA 3722703 Query 23030 TGAGACTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGA 23089 || | | ||| || | |||||||| ||||| || | | ||| |||| ||| ||| Sbjct 3722704 TGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGGCAATGACAAGT 3722763 Query 23090 TGTATAACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAA 23149 |||||||| ||||||| || ||||||||||| || || | | ||| ||||||| Sbjct 3722764 ACTATAACGTAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGCAGGAAAAACAA 3722823 Query 23150 ACTTCTTTGAA 23160 | ||||||||| Sbjct 3722824 ATTTCTTTGAA 3722834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233582633612