Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 seq2 109 5e-19 >seq1 Length=5579133 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | ||||| || ||||| ||||| ||||| ||||| | Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | ||| |||||||| | || |||||||| ||||| ||||| Sbjct 3108714 AAAGTACGTCCA-TCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| |||||| || | | || | ||||| | || |||||| Sbjct 3108773 AATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||| || || | ||||| ||||| |||||||| Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | ||||| || ||||| ||||| ||||||||||| | Sbjct 3238136 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGAC 3238195 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||| || || |||||| |||||| |||||| ||||| ||||| Sbjct 3238196 AAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGA 3238255 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || |||||| || | | || | ||||| | || || ||| Sbjct 3238256 ATTCCTTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACC 3238315 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | |||||||| || || ||||| Sbjct 3238316 TCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| |||| |||||||| ||||||||||| || || Sbjct 3969235 CCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 3969176 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || | || || ||||| |||| |||||||| || || ||||| Sbjct 3969175 AGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGA 3969116 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | || | ||||| | || ||||||| Sbjct 3969115 ATTCCTTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACC 3969056 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| |||||||| || || ||||| || ||||| Sbjct 3969055 TCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 >seq2 Length=4539804 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | ||||| |||||||| ||||||||||| ||||| Sbjct 1044884 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044943 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || ||||||||| | || |||||||| ||||| ||||| Sbjct 1044944 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045003 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| | || | |||| | || | ||||| | | ||| || Sbjct 1045004 ATGCCTTCCTTATC-CTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045062 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1045063 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045111 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | ||||| |||||||| ||||||||||| ||||| Sbjct 1044428 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044487 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || ||||||||| | || |||||||| ||||| ||||| Sbjct 1044488 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1044546 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | |||| | || | ||||| | | ||| | Sbjct 1044547 AATGCCTTCCTTATC-CTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAA 1044605 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1044606 CTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044655 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | || | |||||||| ||||||||||| ||||| Sbjct 1044656 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044715 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || ||||||||| | || |||||||| ||||| ||||| Sbjct 1044716 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044775 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| | || | |||| | || | ||||| | | ||| || Sbjct 1044776 ATGCCTTCCTTATC-CTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044834 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1044835 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | || | |||||||| ||||||||||| ||||| Sbjct 1045112 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045171 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || ||||||||| | || |||||||| ||||| ||||| Sbjct 1045172 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1045230 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | |||| | || | ||||| | | ||| | Sbjct 1045231 AATGCCTTCCTTATC-CTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAA 1045289 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | || || || ||||| ||||| || || ||||||||| Sbjct 1045290 CTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045339 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| | ||||| |||||||| ||||||||||| ||||| Sbjct 1045340 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045399 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| || || ||||||||| | || |||||||| ||||| ||||| Sbjct 1045400 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1045458 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| | || | |||| | || | || |||| | || | Sbjct 1045459 AATGCCTTCCTTATC-CTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAA 1045517 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || || || || || ||||| || ||||| Sbjct 1045518 CTTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063975196800