Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 298 8e-76 seq2 235 8e-57 >seq1 Length=5579133 Score = 298 bits (330), Expect = 8e-76 Identities = 1391/2188 (64%), Gaps = 25/2188 (1%) Strand=Plus/Minus Query 78748 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTC 78807 ||||| |||||||||||||| || || ||||| |||| || || || |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 78808 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 78867 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 78868 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 78927 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 78928 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 78984 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 78985 GCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 79044 | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 79045 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 79104 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 79105 GTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATA 79164 |||||||| || | | ||||| || | ||||||| ||||| || || ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 79165 GGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCC 79224 ||||| || || ||| ||| | || |||| | || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 79225 CAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTA 79284 |||||||||||||| | || ||| ||||| | ||||| |||| |||||| | Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGGAT 4228977 Query 79285 GCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCC 79344 || |||||| || | ||||| | || || | ||| | || ||| ||| Sbjct 4228976 GCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGCC 4228917 Query 79345 TCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAG 79403 || | ||| ||| ||||| |||||||| || | | || || | |||| || || Sbjct 4228916 TCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTG-GCACCTGC 4228858 Query 79404 GCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATA 79461 || ||||| ||| ||||| || ||| || || || | ||||||||||| | | Sbjct 4228857 AGATTCGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACACCCAAA 4228800 Query 79462 CCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 79521 || | || | ||| | | |||| | |||||| |||| ||||||||| |||| Sbjct 4228799 CCAACGGGACGATGGCGCATATTGCTACGGCGAGCTTCAGGAACAGGATAATAGTTAACG 4228740 Query 79522 TCTATAATTTTATTGAGATTCCTGACTATT-ACTTTGACCACATCCTTTAGTTTGAGAAA 79580 || ||||| || ||||| || | || || || || || ||||| | || || | || Sbjct 4228739 TCGATAATCTTGTTGAGGTTAC-GAGTAACGACCTTCACGACATCGTGAAGCTTTTGGAA 4228681 Query 79581 ATCAAATCGTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGC 79640 || | ||| ||| | | ||| || ||| || || || || || |||||||| || Sbjct 4228680 ATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGC 4228621 Query 79641 TACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGT 79700 || || | || | | |||| | || ||||| || ||||| || ||| || Sbjct 4228620 AACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGT 4228561 Query 79701 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGT 79760 || | ||| | ||||| ||| ||| || | ||||||||| | ||||| ||| | Sbjct 4228560 ACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATT 4228501 Query 79761 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 79820 ||||||||||| || |||| | ||| || | ||| || | |||| || || | Sbjct 4228500 ACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA--ATGAA 4228443 Query 79821 CTTGTATCTCTTTTCTC--TTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAA 79878 | | | | ||||| | || || | | || | | |||||||| |||||| Sbjct 4228442 CGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAA 4228383 Query 79879 ACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT 79938 ||||| | || || ||| || | || || | || | ||| | | | | | Sbjct 4228382 ACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTACGTTCA 4228323 Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG- 79997 || |||| |||||| | ||||||||||| | || ||| | | || || || | | Sbjct 4228322 ACACGTTGCATAAACAAGTCAGGAATCCACA-AGGCATAGA-ACATTTCGCGTGCGCGGA 4228265 Query 79998 -CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 80056 |||||||| || | ||||| ||| || | || |||||| ||| | |||||| | Sbjct 4228264 AATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAG 4228205 Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAG 80116 | ||||| || || | | || || || || || ||||| || || | || | || Sbjct 4228204 GCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAG 4228145 Query 80117 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 80176 | ||||| || ||||| | | ||| || | ||| || ||||| |||||||| || || | Sbjct 4228144 CTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAG 4228085 Query 80177 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 80236 ||||| || | || | ||| || ||| | ||| || || || || | | Sbjct 4228084 CAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCT 4228025 Query 80237 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA 80296 | ||||| | || || || | || || ||||| || || || || || ||| Sbjct 4228024 TGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCA 4227965 Query 80297 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 80356 | ||| || ||||| ||| | |||| ||||| ||| || ||||| || | || | Sbjct 4227964 TCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTG 4227905 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 | ||||| || ||||| | || ||||| | |||||| || |||||||| | ||| | Sbjct 4227904 GTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAA 4227845 Query 80417 TATCC-CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 | ||| || | || || || || ||||||||||| | ||| |||||||| | ||| | Sbjct 4227844 TGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCA 4227786 Query 80476 ATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 80535 | ||| | || ||| || ||||| || ||||| || || ||||| | ||| Sbjct 4227785 ACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTG 4227726 Query 80536 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 80595 || | || || || ||||| || ||| | | | || ||||| | ||| | || Sbjct 4227725 TAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTCATTACG 4227666 Query 80596 ACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 80655 | ||| | | | || || || || | | | || | |||| ||||| |||||| Sbjct 4227665 ATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTTACATAG 4227606 Query 80656 T--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 80713 | |||| | | || || | ||| | || | |||| ||| || | || | Sbjct 4227605 TCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTATGCAAGTTGG 4227548 Query 80714 ATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTG 80773 | || || ||||| || || ||||| |||||||| ||||| | |||||| ||| || | Sbjct 4227547 AAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAGTCGCGG 4227488 Query 80774 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGA 80833 | |||| || || | | | |||||||| | || || || || ||| | || | Sbjct 4227487 CAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACACCAGAAA 4227428 Query 80834 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 80893 | || || || |||| | ||||| | |||||| | | | ||||||||| | Sbjct 4227427 TGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAACAAAGCC 4227368 Query 80894 TTCTAATACGAGACGTGATTTTATCAAA 80921 | || ||||| |||||||| ||||| Sbjct 4227367 TCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 235 bits (260), Expect = 8e-57 Identities = 592/895 (66%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 |||||||| || ||||||| ||| || ||||| || ||||| ||||||||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 | || || ||||| ||||||||||| || |||||||| || ||||| || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 ||||| || | ||| | ||| || |||||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || | || |||| |||||||| | || | |||||| ||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 49894 GCATCTGTTATAATAGATCTAACGG--TTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 || || ||||| | | ||| || | | || ||| ||| ||||| ||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||||||| || || ||| ||| |||||||| || | || ||| | ||| ||||||| Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || ||||| || ||||| || ||||||||||| || || ||||| || |||| Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGC 50128 |||||||||| |||||||| || ||||||||||| | | | |||| ||| | Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 |||| ||||| ||||||| | ||| || || | | || ||| ||| | Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||| || || | |||||| ||| || || || ||||| | |||||| Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 || | || || ||||| |||||||| || || || || || | ||| | ||| | Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | | ||||| ||||| | | || || || | ||| ||||| || || || || Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTT 50425 || || ||| | || | |||| ||||| | ||| | | ||| | Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 ||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| | Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 | ||||| || || | | ||| || || ||||| | ||||| || | |||||| Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268764086560