Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 185 8e-42 >seq2 Length=4539804 Score = 185 bits (204), Expect = 8e-42 Identities = 584/898 (65%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || |||||||| |||| || ||| |||| | ||||||||||| || ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 | | || ||||| ||||| ||||| || ||||| || || | || ||| Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || | | | | || | |||||||| ||| |||||||| ||| |||| ||||| | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 |||||||| | || | || |||| | || || ||||||| || ||| ||| Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || || ||||| | || || || || | || | ||| |||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGCCTGGTCTGTGCTTCAAATGACTAAAC 3722573 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 || ||||| ||||| || ||||| |||||||| | || ||| | ||| || ||||| Sbjct 3722572 ATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAA 3722513 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || | || ||||| | ||| ||||| || | |||||| || | ||||| || || ||| Sbjct 3722512 GTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAA 3722453 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| || || || || |||||||| || | || || | || | | || | || Sbjct 3722452 AAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGG-TGGAATCTTC 3722394 Query 14046 TTCGATA-TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14104 || || |||| |||||| | | ||| |||||| || |||||||| ||| Sbjct 3722393 ATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAAT 3722334 Query 14105 AGCATTAAATAAATATTCCTTCTCTTTAG-TACTTGAAATGTATGTATCA---ATAAGTA 14160 ||||| || | | || || |||| | | ||| ||||||||||| | |||| Sbjct 3722333 AGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAA-TGTATGTATCAAGCAAAAGTG 3722275 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 || || | |||||||| || ||||| || || || |||||||||| || | || Sbjct 3722274 AG---TAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAG 3722218 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 |||| | || ||||| ||| || | ||| | ||| |||||||| ||||||| Sbjct 3722217 CTTCAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCAT 3722158 Query 14281 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 | || || ||| | || | || | ||||||||| | || ||| || | | Sbjct 3722157 CTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACT 3722098 Query 14341 TTTT---CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14397 | || |||||| || || || |||||||| | ||| ||| | ||||||||| | Sbjct 3722097 TGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATG 3722038 Query 14398 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | |||| || || || | | ||| ||||| | ||| || ||||| | ||||| Sbjct 3722037 CTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727976013600