Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 187 2e-42 >seq2 Length=4539804 Score = 187 bits (206), Expect = 2e-42 Identities = 592/905 (65%), Gaps = 27/905 (3%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || |||||||| |||| || ||| |||| | |||||||| || || ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 | | || ||||| ||||| |||||||| ||||| ||| || | || ||| Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || | | | || || | |||||||| ||| |||||||| ||| |||| ||||| | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 |||||||| | || | || |||| | || || ||||||| || ||| ||| Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 13594 GCCTCGTTTATAATAAT--CTT-AATAATGTCATTAGAAGGAGGATAT----TTTAGATG 13646 || || | |||||| ||| || || | || | | | | | || | ||| Sbjct 3722632 GCTTCA---ACAATAATGGCTTCAACAA---CCTT-GCGGCCTGGTCTGTGCTTCAAATG 3722580 Query 13647 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 13706 |||| || ||||| ||||| || ||||| |||||||| | || ||| | ||| || Sbjct 3722579 ACTAAACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATT 3722520 Query 13707 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 13766 ||||| || | || ||||| | ||| ||||| || | |||||| || | || || || Sbjct 3722519 GGAAAAAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGA 3722460 Query 13767 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC 13826 ||| |||||||| || || || || |||||||| || | | || | || | | | Sbjct 3722459 TCCAGAAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGA 3722400 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 | || | ||||| |||||| | | ||| |||||| || ||||||| Sbjct 3722399 ATCTTCATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGT 3722340 Query 13887 TTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG-TACTTGAAATGTATGTATCAAT-- 13943 | || |||| ||| | | | || || |||| | | ||| |||||||||||| Sbjct 3722339 TAAAATAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAA-TGTATGTATCAAGCA 3722281 Query 13944 -AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAAC 14002 |||| || || | |||||||| || ||||| || || || |||||||||| || Sbjct 3722280 AAAGTGAG---TAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACAC 3722224 Query 14003 ATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACA 14061 | | |||||| | || || || ||| || | || | ||| || ||||||||| Sbjct 3722223 AACGAGCTTCAGGGATCTGAACTTCAGAGCTGAAACGCTC-GAGAAGATTCTCATTAACA 3722165 Query 14062 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG 14121 |||||||| || || ||| | || | || | ||||||||| | || ||| Sbjct 3722164 ATACCATCTGACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCA 3722105 Query 14122 TTGAGTTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 || | || || |||||| | || || || |||||||| | ||| ||| | |||||| Sbjct 3722104 TTTAACTTGTTATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAA 3722045 Query 14179 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14238 ||| || |||| || || || | | ||| ||||| | ||| || ||||| | Sbjct 3722044 AAAGATGCTTCAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAA 3721985 Query 14239 ACAAA 14243 ||||| Sbjct 3721984 ACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588776070560