Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 120 2e-22 seq2 87.8 1e-12 >seq1 Length=5579133 Score = 120 bits (132), Expect = 2e-22 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||| || | |||| ||| ||||| | ||||||||| || Sbjct 2794498 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAA 2794557 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || ||||| || || ||||||||||||||||| |||||||| | || Sbjct 2794558 AGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGA 2794617 Query 43003 ACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| ||| |||| ||||| || ||| ||||| | || | Sbjct 2794618 ATTCCTTCCTTGTC-CTGAATCTTACTC-TTGACATTGTCAATAGTGTCAGAGGATTCCA 2794675 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | |||| ||||||||||| || || | ||| || |||||||| ||||| || Sbjct 2794676 CCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || | || | |||| ||||||||| | |||||||| ||| Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || || || || || || ||||| | || |||||||| | || Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773 Query 43003 ACACCTTCTTTTTCGCTGATCAA-CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||||| ||| | ||| ||||| | ||| || Sbjct 3108774 ATTCCTTCTTTGTCTTGGATTTTGCTCTT-GACATTATCAATAGTGTCAGAGGACTCCAC 3108832 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || ||||| || |||||||||||||| Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 >seq2 Length=4539804 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||| || | |||||| |||| || | ||| || || ||||| Sbjct 1044691 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044750 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035 ||| | || |||||||| | || | ||||| || || |||| || |||||| || Sbjct 1044751 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1044808 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||||| || ||| || || | || || ||||| || || | ||||| Sbjct 1044809 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1044868 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 1044869 ACAAAAATTTGCAT 1044882 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||| || | |||||| |||| || | ||| || || ||||| Sbjct 1044919 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044978 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035 ||| | || |||||||| | || | ||||| || || |||| || |||||| || Sbjct 1044979 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1045036 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||||| || ||| || || | || || ||||| || || | ||||| Sbjct 1045037 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1045096 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 1045097 ACAAAAATTTGCAT 1045110 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||| || | |||||| | || || | ||| || || ||||| Sbjct 1044463 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1044522 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035 ||| | || |||||||| | || | ||||| || || |||| || |||||| || Sbjct 1044523 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1044580 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||||| || ||| || || | || || ||||| || || | ||||| Sbjct 1044581 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1044640 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 1044641 ACAAAAATTTGCAT 1044654 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||||| || | |||||| | || || | ||| || || ||||| Sbjct 1045147 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1045206 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035 ||| | || |||||||| | || | ||||| || || |||| || |||||| || Sbjct 1045207 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1045264 Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 | ||| ||||| || ||| || || | || || ||||| || || | ||||| Sbjct 1045265 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1045324 Query 43096 ACAAAAATTTGCAT 43109 |||||||||||||| Sbjct 1045325 ACAAAAATTTGCAT 1045338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369581408232