Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 2e-22
seq2 87.8 1e-12
>seq1
Length=5579133
Score = 120 bits (132), Expect = 2e-22
Identities = 169/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | | ||||| || | |||| ||| ||||| | ||||||||| ||
Sbjct 2794498 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAA 2794557
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || ||||| || || ||||||||||||||||| |||||||| | ||
Sbjct 2794558 AGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGA 2794617
Query 43003 ACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060
| ||||| || || ||| ||| |||| ||||| || ||| ||||| | || |
Sbjct 2794618 ATTCCTTCCTTGTC-CTGAATCTTACTC-TTGACATTGTCAATAGTGTCAGAGGATTCCA 2794675
Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
| |||| ||||||||||| || || | ||| || |||||||| ||||| ||
Sbjct 2794676 CCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTT 2794727
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| ||||| || | || || | || | |||| ||||||||| | |||||||| |||
Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| |||||| | || || || || || || || ||||| | || |||||||| | ||
Sbjct 3108714 AAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGA 3108773
Query 43003 ACACCTTCTTTTTCGCTGATCAA-CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061
| |||||||| || ||| ||||| ||| | ||| ||||| | ||| ||
Sbjct 3108774 ATTCCTTCTTTGTCTTGGATTTTGCTCTT-GACATTATCAATAGTGTCAGAGGACTCCAC 3108832
Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| | || || || || || || || ||||| || ||||||||||||||
Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883
>seq2
Length=4539804
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | |||||||| || | |||||| |||| || | ||| || || |||||
Sbjct 1044691 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044750
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035
||| | || |||||||| | || | ||||| || || |||| || |||||| ||
Sbjct 1044751 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1044808
Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095
| ||| ||||| || ||| || || | || || ||||| || || | |||||
Sbjct 1044809 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1044868
Query 43096 ACAAAAATTTGCAT 43109
||||||||||||||
Sbjct 1044869 ACAAAAATTTGCAT 1044882
Score = 87.8 bits (96), Expect = 1e-12
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | |||||||| || | |||||| |||| || | ||| || || |||||
Sbjct 1044919 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAA 1044978
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035
||| | || |||||||| | || | ||||| || || |||| || |||||| ||
Sbjct 1044979 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1045036
Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095
| ||| ||||| || ||| || || | || || ||||| || || | |||||
Sbjct 1045037 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1045096
Query 43096 ACAAAAATTTGCAT 43109
||||||||||||||
Sbjct 1045097 ACAAAAATTTGCAT 1045110
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | |||||||| || | |||||| | || || | ||| || || |||||
Sbjct 1044463 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1044522
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035
||| | || |||||||| | || | ||||| || || |||| || |||||| ||
Sbjct 1044523 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1044580
Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095
| ||| ||||| || ||| || || | || || ||||| || || | |||||
Sbjct 1044581 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1044640
Query 43096 ACAAAAATTTGCAT 43109
||||||||||||||
Sbjct 1044641 ACAAAAATTTGCAT 1044654
Score = 84.2 bits (92), Expect = 2e-11
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | |||||||| || | |||||| | || || | ||| || || |||||
Sbjct 1045147 CTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCAGCAAA 1045206
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAA-CTCTTTGACT 43035
||| | || |||||||| | || | ||||| || || |||| || |||||| ||
Sbjct 1045207 AATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC-CTGAATCTTGCTCTTT-ACG 1045264
Query 43036 CTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095
| ||| ||||| || ||| || || | || || ||||| || || | |||||
Sbjct 1045265 TTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTTTTG 1045324
Query 43096 ACAAAAATTTGCAT 43109
||||||||||||||
Sbjct 1045325 ACAAAAATTTGCAT 1045338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381369581408232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |