Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 244 1e-59 seq1 242 5e-59 >seq2 Length=4539804 Score = 244 bits (270), Expect = 1e-59 Identities = 595/895 (66%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 |||||||| || ||||||| ||| || ||||| || ||||| || |||||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 | || || ||||| ||||||||||| || |||||||| || ||||| || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 ||||| || | ||| | ||| || | ||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || | || |||| |||||||| | || | |||||| |||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 41999 GCGTCTGTTATAATAGATCTTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTAA 42056 || || ||||| | | || || | | || ||| | | ||||| ||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||||||| || || ||| ||| ||||||||||| | || ||| ||||| ||||||| Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || || || ||||| || ||||| || ||||||||||| ||||| ||||| ||||||| Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CT- 42234 |||||||||| |||||||| || |||||||||| | | | |||| || | || Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395 Query 42235 -GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 |||| ||||| ||||||| | ||| || || | | || ||| ||| | Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||| || || | |||||| ||| || || |||||||| | |||||| Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 || | || || ||||| |||||||| || || || || || | ||| | || | Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | | | ||| ||||| | | || || || | ||| || || || || || || Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TT 42530 || || ||| | || | |||| ||||| || ||| || | |||| | Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 ||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||||| Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | ||||| || || | | ||| || || ||||| | |||||| || | |||||| Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 >seq1 Length=5579133 Score = 242 bits (268), Expect = 5e-59 Identities = 1374/2188 (63%), Gaps = 25/2188 (1%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| ||||||||||| || || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || | ||| ||| |||||| | |||||| |||| || |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 71010 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 71011 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 71067 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 71068 GCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 71127 || || | || || || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 71128 AGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 71187 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 71188 GTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 71247 ||||| || || | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 71248 GGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCC 71307 ||||| || || | | ||| | || || ||| || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 71308 CAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTA 71367 |||| ||||||||| | || ||| || || | Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACCCTGGGAT 4228977 Query 71368 GCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCC 71427 || |||||| |||| | || |||| || ||| | ||| | || ||| ||| Sbjct 4228976 GCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGAGGCC 4228917 Query 71428 TCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGG 71486 || | ||| | | ||||| |||||||| || | | || || | |||| || | | Sbjct 4228916 TCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTG-GCACCTGC 4228858 Query 71487 GCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATA 71544 || ||||| ||| ||||| || ||| || || || | |||||||| || | | Sbjct 4228857 AGATTCGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACACCCAAA 4228800 Query 71545 CCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATA 71604 || | || | || | | |||| | |||||| |||| ||||||||| |||| Sbjct 4228799 CCAACGGGACGATGGCGCATATTGCTACGGCGAGCTTCAGGAACAGGATAATAGTTAACG 4228740 Query 71605 TCTATAATTTTATTGAGATTTCTGACTATT-ACTTTGACCACATCCTTTAGTTTGAGAAA 71663 || ||||| || ||||| || | || || || || || ||||| | || || | || Sbjct 4228739 TCGATAATCTTGTTGAGGTTAC-GAGTAACGACCTTCACGACATCGTGAAGCTTTTGGAA 4228681 Query 71664 ATCAAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGC 71723 || | | || ||| | | ||| | ||| ||||| || || || |||||||| || Sbjct 4228680 ATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAAACAGC 4228621 Query 71724 TACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGT 71783 || || | || | | |||| | ||| ||||| || || || || || || Sbjct 4228620 AACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGAATAGT 4228561 Query 71784 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGT 71843 || | ||| | ||||| ||| ||| || | ||||||||| | || || ||| | Sbjct 4228560 ACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAAGGATT 4228501 Query 71844 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT 71903 ||||||||||| || |||| | ||| || | ||| || | |||| || | | Sbjct 4228500 ACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAATGAA-- 4228443 Query 71904 CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT--CGAACTCGTCTCCCCAA 71961 | | | | ||||| ||| || | | || | | |||||||| |||||| Sbjct 4228442 CGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCACCCCAA 4228383 Query 71962 GCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT 72021 ||| | || || ||| ||||| || || | || | ||| | | | | | Sbjct 4228382 ACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTACGTTCA 4228323 Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || |||| |||||| | ||||||||||| | || ||| | | || || || | | Sbjct 4228322 ACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGTGCGCGGA 4228265 Query 72082 --TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 |||||||| || | ||||| ||| || | || |||||| ||| | |||||| | Sbjct 4228264 AATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCATGCCAAG 4228205 Query 72140 GTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 72199 | ||||| || || | | || || || || || ||||| || || | || | || Sbjct 4228204 GCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACATAACGAG 4228145 Query 72200 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 72259 | ||||| || ||||| | | ||| || | ||| || ||||| | |||||| || || | Sbjct 4228144 CTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAGTTCCAG 4228085 Query 72260 AGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTT 72319 ||||| || | || | ||| ||| ||| | ||| || || || || | | Sbjct 4228084 CAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAGCGGTCT 4228025 Query 72320 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 72379 | ||||| | || || || | || || ||||| || || ||| || || ||| Sbjct 4228024 TGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGTCTTTCA 4227965 Query 72380 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 72439 | ||| || ||||| ||| | |||| ||||| ||| || ||||| || | || | Sbjct 4227964 TCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAAGAGTTG 4227905 Query 72440 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 72499 | ||||| || ||||| | || ||||| | |||||| || |||||||| | ||| | Sbjct 4227904 GTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAGCTTCAA 4227845 Query 72500 TATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 | ||| || | || || || || ||||||||||| | |||||||||||| | ||| | Sbjct 4227844 TGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGCTCAGCA 4227786 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 | ||| | || ||| || || || || ||||| || || ||||| | ||| Sbjct 4227785 ACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAGAAATTG 4227726 Query 72619 TATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACT 72678 || | || || || ||||| || ||| | || | || ||||| | ||| | || Sbjct 4227725 TAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTCATTACG 4227666 Query 72679 ATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 72738 ||||| | | | || || || || | | | || | |||| ||||| |||||| Sbjct 4227665 ATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTTACATAG 4227606 Query 72739 T--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 72796 | |||| | | || || | ||| | || | |||| ||| || | || | Sbjct 4227605 TCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTATGCAAGTTGG 4227548 Query 72797 ATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTG 72856 | || || ||||| || || | ||| |||||||| ||||| | |||||| ||| || | Sbjct 4227547 AAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAGTCGCGG 4227488 Query 72857 CTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGA 72916 | |||| || || | | | |||||||| | || || || || ||| | || | Sbjct 4227487 CAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACACCAGAAA 4227428 Query 72917 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 72976 | || || || |||| | ||||| | |||||| | | | ||||||||| | Sbjct 4227427 TGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAACAAAGCC 4227368 Query 72977 TTCTAATACGAGACGTGATTTTATCAAA 73004 | || ||||| |||||||| ||||| Sbjct 4227367 TCGAAACACGAGCAGTGATTTTGTCAAA 4227340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139166443040