Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1 102 8e-17
seq2 100 3e-16
>seq1
Length=5579133
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||||||||| | |||| || || || ||||| ||||||||||| |
Sbjct 3108654 CCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGAC 3108713
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| | || |||||||| | || |||||||| ||||| |||||
Sbjct 3108714 AAAGTACGTCCA-TCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| ||||| || | | || | ||||| | || || ||
Sbjct 3108773 AATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | |||||| || || | ||||| ||||| ||||||||
Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||||||||||| ||||| || ||||| |||||||| ||
Sbjct 3969235 CCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAA 3969176
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | || || | ||| || ||||| |||| |||||||| || || |||||
Sbjct 3969175 AGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGA 3969116
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| ||||| || | | || | ||||| | || || ||
Sbjct 3969115 ATTCCTTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACC 3969056
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | ||||| |||||||| || || ||||| || |||||
Sbjct 3969055 TCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009
>seq2
Length=4539804
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| | |||| ||||| || ||||| |||||||||||
Sbjct 1044428 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044487
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| ||||| ||||||||| | || |||||||| ||||| |||||
Sbjct 1044488 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1044546
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||| || |||| | || | ||||| | | || ||
Sbjct 1044547 AATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1044606
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | || | || || || ||||| ||||| || || |||||||||
Sbjct 1044607 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044655
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| | ||| | ||||| || ||||| |||||||||||
Sbjct 1044656 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044715
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||| ||||| ||||||||| | || |||||||| ||||| |||||
Sbjct 1044716 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1044775
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| || || ||| || |||| | || | ||||| | | || |||
Sbjct 1044776 ATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACT 1044835
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | || || || ||||| ||||| || || |||||||||
Sbjct 1044836 TCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044883
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| | |||| ||||| || ||||| |||||||||||
Sbjct 1044884 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1044943
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||| ||||| ||||||||| | || |||||||| ||||| |||||
Sbjct 1044944 AGAGTACGTCCGTCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 1045003
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||| || || ||| || |||| | || | ||||| | | || |||
Sbjct 1045004 ATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACT 1045063
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | || | || || || ||||| ||||| || || |||||||||
Sbjct 1045064 TCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045111
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| | ||| | ||||| || ||||| |||||||||||
Sbjct 1045112 CCGCCACGAAGACGAAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045171
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| ||||| ||||||||| | || |||||||| ||||| |||||
Sbjct 1045172 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1045230
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||| || |||| | || | ||||| | | || ||
Sbjct 1045231 AATGCCTTCCTTATCCTGAATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAAC 1045290
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
||| | || | || || || ||||| ||||| || || |||||||||
Sbjct 1045291 TTCCAATGTAATGGTTTTACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045339
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| | |||| ||||| || ||||| |||||||||||
Sbjct 1045340 CCGCCACGAAGACGAAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAA 1045399
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | ||||| ||||| ||||||||| | || |||||||| ||||| |||||
Sbjct 1045400 AGAGTACGTCCA-TCTTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGG 1045458
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| || || ||| || |||| | || | || || | | ||| ||
Sbjct 1045459 AATGCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAAC 1045518
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | || | ||||| || || ||||| || ||||| || |||||
Sbjct 1045519 TTCCAATGTAATAGTCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507014374649280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |