Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq1 122 6e-23 >seq2 Length=4539804 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||||||||| ||| | | ||||||| | ||| Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGC 1044967 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | ||||||||| || ||||| ||||| || || ||| ||| Sbjct 1044968 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045027 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||||| | || ||||| || | || || || || |||||||||||||| ||| Sbjct 1045028 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1045087 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||||||||||||| Sbjct 1045088 AAGGTTTTGACAAAAATTTGCATA 1045111 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || || ||||| ||||||||||| ||| | | ||||||| Sbjct 1044673 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTC 1044732 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | ||||||||| || ||||| ||||| || || Sbjct 1044733 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1044792 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||||||||||| | || ||||| || | || || || || ||||||||||| Sbjct 1044793 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1044852 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| |||| ||||| ||||||||||||||| Sbjct 1044853 ACCAGTCAAGGTTTTGACAAAAATTTGCATA 1044883 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||||||||| ||| | | | ||||| | ||| Sbjct 1044452 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1044511 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | ||||||||| || ||||| ||||| || || ||| ||| Sbjct 1044512 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1044571 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||||| | || ||||| || | || || || || |||||||||||||| ||| Sbjct 1044572 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1044631 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 | ||||| ||||||||||||||| Sbjct 1044632 AAGGTTTTGACAAAAATTTGCATA 1044655 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || || ||||| ||||||||||| ||| | | | ||||| Sbjct 1045129 AACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTC 1045188 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || ||||| | || | ||||||||| || ||||| ||||| || || Sbjct 1045189 AAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTG 1045248 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||||||||||| | || ||||| || | || || || || ||||||||||| Sbjct 1045249 AATCTTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTT 1045308 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| |||| ||||| ||||||||||||||| Sbjct 1045309 ACCAGTCAAGGTTTTGACAAAAATTTGCATA 1045339 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| ||||||||||| ||| | | | ||||| | ||| Sbjct 1045364 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1045423 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | ||||||||| || ||||| ||||| || || ||| ||| Sbjct 1045424 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045483 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||||| | || ||||||||| | ||| || || || ||||| || || || || Sbjct 1045484 CTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAGTT 1045543 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||| ||||| Sbjct 1045544 AATGTCTTGACGAAAATCTGCAT 1045566 >seq1 Length=5579133 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| ||||| || ||||| ||||||||||| | | | | | ||| Sbjct 3108669 AAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCT 3108728 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 ||||| || || |||||| | || | ||||||||| || ||||||||||||||||| Sbjct 3108729 TCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCT 3108788 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||||||| ||| | || || || || || || || | |||||| || Sbjct 3108789 TGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTC 3108848 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || || ||||| || ||||||||||| || Sbjct 3108849 TTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| | ||||| ||||| || ||||| ||||| ||||| | | | | |||| Sbjct 3238151 AAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCC 3238210 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||| |||||||| | |||||||||||||| || ||||||||||| || || Sbjct 3238211 TCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCT 3238270 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||||||||||| ||| | || || || || ||| || || | ||||||||| Sbjct 3238271 TGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTC 3238330 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||||||||| || ||||| Sbjct 3238331 TTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||||||||||||||| || || ||||| |||||||| || ||| | | | || || Sbjct 3969218 AACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCCTC 3969159 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||| || |||||| | || | |||||||||||| ||||||||||| ||||| Sbjct 3969158 TAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTG 3969099 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||||||| ||| | || || || || || || || | ||| || || || Sbjct 3969098 GATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTT 3969039 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || || ||||| ||||| Sbjct 3969038 TCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||| ||||| |||||||| || |||||||| ||| | | | || || Sbjct 2794515 AACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTC 2794574 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || || || || || | ||||| |||||||| || ||||||||||| ||||| Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||||| ||| | || || || || ||| || |||| ||| || ||||| Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||| |||| ||| || |||||||| ||||| ||| Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCATCTTT 2794728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179182343764