Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 4e-13
>seq2
Length=4539804
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||||||||| |||||||| | | || |||| || || || |||||
Sbjct 1044686 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCA 1044745
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | || ||||| || | ||| || || || ||| || |||
Sbjct 1044746 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1044805
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | || || || ||| ||| | |||||||||||||| || || |||
Sbjct 1044806 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1044865
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||||||||||||
Sbjct 1044866 TTGACAAAAATTTGCAT 1044882
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||||||||| |||||||| | | || |||| || || || |||||
Sbjct 1044914 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGCTTACCA 1044973
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | || ||||| || | ||| || || || ||| || |||
Sbjct 1044974 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1045033
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | || || || ||| ||| | |||||||||||||| || || |||
Sbjct 1045034 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1045093
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||||||||||||
Sbjct 1045094 TTGACAAAAATTTGCAT 1045110
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||||||||| |||||||| | | || | || || || || |||||
Sbjct 1044458 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCA 1044517
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | || ||||| || | ||| || || || ||| || |||
Sbjct 1044518 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1044577
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | || || || ||| ||| | |||||||||||||| || || |||
Sbjct 1044578 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1044637
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||||||||||||
Sbjct 1044638 TTGACAAAAATTTGCAT 1044654
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
||||||||||||||||| |||||||| | | || | || || || || |||||
Sbjct 1045142 GTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGCTTACCA 1045201
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| ||||||| | || ||||| || | ||| || || || ||| || |||
Sbjct 1045202 GCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTGCTCTTT 1045261
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | || || || ||| ||| | |||||||||||||| || || |||
Sbjct 1045262 ACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTCAAGGTT 1045321
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||||||||||||
Sbjct 1045322 TTGACAAAAATTTGCAT 1045338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414572779789576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |