Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq1 87.8 1e-12
>seq1
Length=5579133
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || ||||||||||| |||||||||||||| | | | | || |||
Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCC 2794575
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
|| |||||||| ||| || || ||||| || || | || || ||||| || || |
Sbjct 2794576 AACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGA 2794635
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| || || | | ||| ||||| || || || || || ||||| |||||
Sbjct 2794636 ATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTA 2794695
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373
|| || | ||| || || ||||| ||||| |||
Sbjct 2794696 CCAGTCAAAGTCTTGACAAAAATCTGCATCTTT 2794728
Score = 86.0 bits (94), Expect = 4e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||| || | || | || ||||| ||||| || || |||||||||||| | || |
Sbjct 3238148 CGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCG 3238207
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| || | |||||| ||| ||| || |||||||| || || | || || ||||| ||
Sbjct 3238208 TCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTA 3238267
Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334
|| || || || | | ||| ||||| || || ||| || || || ||
Sbjct 3238268 TCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATG 3238327
Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || |||||||| |||||||| || || |||||
Sbjct 3238328 GTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318777584459592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |