Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 212 5e-50 >seq2 Length=4539804 Score = 212 bits (234), Expect = 5e-50 Identities = 584/881 (66%), Gaps = 17/881 (2%) Strand=Plus/Minus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||| || || |||| | |||||||| || |||||||||||| |||| || ||||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 12921 CCATAAAATCGAAAGGATT--TTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 |||| |||||||||||||| || || |||||| || | | || || | | || Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACG--TTATAGTACTTGTCATTGCCCAAAGCAACCAA 3722739 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||| | ||||||||||| || || ||||| ||| ||||| ||||| || | | Sbjct 3722738 CAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAG 3722679 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | || || | ||| || || || | | ||| || |||||||| ||||| | || || Sbjct 3722678 ACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAAT 3722619 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--AGATGCTTAAACATCATACATGCA 13156 | || | || || || | | || | | ||| ||||||||| ||| ||| Sbjct 3722618 GGCTTCAACAACCTTGCGGCCTG--GTCTGTGCTTCAAATGACTAAACATCAAACAGGCA 3722561 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || || ||| | || ||||| | || || | || || ||||| || ||||| ||| Sbjct 3722560 AAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGC 3722501 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 ||||| || ||||| |||| |||||| |||| |||||||| || ||||| || || ||| Sbjct 3722500 ATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCT 3722441 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 || || || ||||| || | ||| | |||| || || || | | ||||| Sbjct 3722440 TCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAA 3722381 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 ||||| || ||||| |||| | ||| || || || | || | Sbjct 3722380 CGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGA 3722321 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTA-TACATTTCTGA 13455 | |||||||||| || ||| || ||||| | ||| ||| | || | || || Sbjct 3722320 CGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAA-AAGTGAGTAGGTCTCAGA 3722262 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||||||||||| ||| |||||||||||||||| ||| | ||| || | | |||||| Sbjct 3722261 GTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTTCAGGGATCTGAAC 3722202 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAG-TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 ||| ||| || | || | ||| || || ||||| || || || ||||| ||| Sbjct 3722201 TTCAGAGCTGAAACGCTC-GAGAAGATTCTCATTAACAATACCATCTGACGCAGCGAAAT 3722143 Query 13575 aaGCAAGTA-TGTGCTTAATAAAttttttttCGTTTTCTGACAACT--TTA-ACCAATCT 13630 | || |||| ||| |||||| | ||| | | |||| ||| |||||| Sbjct 3722142 AGGCGAGTACAGTG-GAAATAAAGTAACGTTCATCAGCATTTAACTTGTTATCCCAATCA 3722084 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 || ||||| || | ||| | |||||| | ||||||||||| || |||||||||| Sbjct 3722083 ACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTTCAGCCTTCTTG 3722024 Query 13691 TACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || | ||| || || | ||| ||| ||||||| ||| Sbjct 3722023 TAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAAC 3721983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982378989608