Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 201 3e-46
seq1 143 6e-29
>seq2
Length=4539804
Score = 201 bits (222), Expect = 3e-46
Identities = 567/865 (66%), Gaps = 17/865 (2%)
Strand=Plus/Plus
Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762
||||| | |||||||| || || || || ||| | ||||| |||| | ||
Sbjct 3721980 TTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAGAAGGCTGAAGCA 3722039
Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG---AAAAAT 268819
||||||||||||| || ||| | ||||| || | ||||| | |||||| || ||
Sbjct 3722040 TCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGATTGGGATAACAAG 3722099
Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879
||||| | || ||| | ||||| || | | || || | ||| || | |||
Sbjct 3722100 TTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTCGCTGCGTCAGAT 3722159
Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939
||||| ||||| || ||||| | ||| ||| | || || ||||| ||||||||
Sbjct 3722160 GGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGCTCTGAAGTTCAGATCCCTGAAGCT 3722219
Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999
| ||| |||| || ||||| || || ||||||||||| || |||| ||| ||
Sbjct 3722220 CGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTACTCACTT 3722279
Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTATGA 269057
|| | ||||| || || ||| || ||||| | || | |||| | ||||
Sbjct 3722280 TTGCTTGATACATACATTCGTGAACCTAAGGAAAA--ACAGCGTCATTTCGATGCTATTT 3722337
Query 269058 GAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCG 269117
||| |||| | | | | ||| | | |||||||| ||||| || ||| |
Sbjct 3722338 TAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTAATGATGAAG 3722397
Query 269118 ---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGG 269174
| | || | | | || ||||| ||||| |||||||||||||| |||||||| |
Sbjct 3722398 ATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTG 3722457
Query 269175 GGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234
| || |||||| |||| |||||| | |||||| | || |||||||| || | ||||| |
Sbjct 3722458 GATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTT 3722517
Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294
| || |||||||| | | || || ||| | ||| |||||| || ||||| | ||||
Sbjct 3722518 CCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTA 3722577
Query 269295 CTAATTATCTTTCACACAAACC--TTCTCAAGATAGAGTATACGAAATTATAGATTCAGC 269352
| ||| | |||| ||| | |||| | || | | ||||| | | |||
Sbjct 3722578 GTCATT---TGAAGCACAGACCAGGCCGCAAGGT--TGTTGAAGCCATTATTGTTGAAGC 3722632
Query 269353 TGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412
|||| | | || | ||||| | ||||| ||||| | | ||| | ||||||||
Sbjct 3722633 TGTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAA 3722692
Query 269413 TAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGG 269472
|| | | |||| | |||||| | || || ||||| | ||| |||| |||| ||
Sbjct 3722693 TAAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGG 3722752
Query 269473 GTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGA 269532
| || | |||||||| ||||| || ||| ||||||||||| || ||||
Sbjct 3722753 CAATGACAAGTACTATAACGTAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGC 3722812
Query 269533 AGGTAAGGCTAATTTCTTCGAGAAG 269557
||| || | |||||||| || |||
Sbjct 3722813 AGGAAAAACAAATTTCTTTGAAAAG 3722837
Score = 167 bits (184), Expect = 5e-36
Identities = 167/214 (78%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || || ||||| || || || || ||||| | || ||
Sbjct 1045354 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1045413
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || ||||||||||| || | |||||||||||||| || ||||| |||||
Sbjct 1045414 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045473
Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||||||| ||||| |||||||| || | ||||||| || ||| || || | ||||||||
Sbjct 1045474 CTGAATC-TTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAG 1045532
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| ||||| | ||| || || || ||||||||
Sbjct 1045533 TCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566
Score = 158 bits (174), Expect = 3e-33
Identities = 165/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||||| ||||| || || ||||| || || || || ||||| | |||||
Sbjct 1044670 AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTC 1044729
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || ||||||||||| || | |||||||||||||| || ||||| |||||
Sbjct 1044730 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1044789
Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||||||| ||||| ||||| || || | ||| || || || || || | |||||| |
Sbjct 1044790 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1044848
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||||||| | ||||| ||||| || |||||
Sbjct 1044849 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 154 bits (170), Expect = 3e-32
Identities = 164/214 (77%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||||| ||||| || || ||||| || || || || ||||| | || ||
Sbjct 1045126 AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1045185
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || ||||||||||| || | |||||||||||||| || ||||| |||||
Sbjct 1045186 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045245
Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||||||| ||||| ||||| || || | ||| || || || || || | |||||| |
Sbjct 1045246 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1045304
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||||||| | ||||| ||||| || |||||
Sbjct 1045305 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338
Score = 149 bits (164), Expect = 1e-30
Identities = 163/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || || ||||| || || || || ||||| | |||||
Sbjct 1044898 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTC 1044957
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || ||||||||||| || | |||||||||||||| || ||||| |||||
Sbjct 1044958 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045017
Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||||||| ||||| ||||| || || | ||| || || || || || | |||||| |
Sbjct 1045018 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1045076
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||||||| | ||||| ||||| || |||||
Sbjct 1045077 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110
Score = 145 bits (160), Expect = 2e-29
Identities = 162/214 (76%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || | ||||| || || ||||| || || || || ||||| | || ||
Sbjct 1044442 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1044501
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || ||||||||||| || | |||||||||||||| || ||||| |||||
Sbjct 1044502 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1044561
Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525
||||||| ||||| ||||| || || | ||| || || || || || | |||||| |
Sbjct 1044562 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1044620
Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| |||||||| | ||||| ||||| || |||||
Sbjct 1044621 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654
>seq1
Length=5579133
Score = 143 bits (158), Expect = 6e-29
Identities = 152/198 (77%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || ||||| ||||| | ||| | ||||| || ||||| || |||
Sbjct 3238166 GTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCGAGTTGCTTGCCA 3238225
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
||||| || | | |||||||||||||| |||||||| ||||| || || |||||| ||
Sbjct 3238226 GCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGGAT-TTTGCTCTT 3238284
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || || | ||| ||||| || ||||| |||||||| ||||| ||
Sbjct 3238285 GACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTAAGGGT 3238344
Query 104542 TTTTACAAATATCTGCAT 104559
||||||||| ||||||||
Sbjct 3238345 TTTTACAAAGATCTGCAT 3238362
Score = 136 bits (150), Expect = 9e-27
Identities = 150/200 (75%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || ||||| || ||||| || ||||| ||||| | ||| || || | || |||||
Sbjct 2794528 GTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCG 2794587
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | |||||||||||||| |||||||| || ||||||||||| ||
Sbjct 2794588 GCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTG 2794647
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || | ||| |||||||| || ||||| |||||||| | ||
Sbjct 2794648 ACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTC 2794707
Query 104543 TTTACAAATATCTGCATTTT 104562
|| ||||| |||||||| ||
Sbjct 2794708 TTGACAAAAATCTGCATCTT 2794727
Score = 127 bits (140), Expect = 5e-24
Identities = 151/202 (75%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || || || || ||||| | ||| | || ||||||| || || |||
Sbjct 3108684 GTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCA 3108743
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
|| ||||| || | |||||||||||||| ||||||||||| || || || |||||| ||
Sbjct 3108744 GCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGAT-TTTGCTCTT 3108802
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || || | || ||||| || ||||| |||||||| ||||| ||
Sbjct 3108803 GACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGT 3108862
Query 104542 TTTTACAAATATCTGCATTTTG 104563
||| || || || |||||||||
Sbjct 3108863 TTTGACGAAAATTTGCATTTTG 3108884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398340990832
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