Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 201 3e-46 seq1 143 6e-29 >seq2 Length=4539804 Score = 201 bits (222), Expect = 3e-46 Identities = 567/865 (66%), Gaps = 17/865 (2%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| | |||||||| || || || || ||| | ||||| |||| | || Sbjct 3721980 TTTGTTTTGTTTCCAATTAAGTATCACGAAATTTGGCAATTCTACAAGAAGGCTGAAGCA 3722039 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG---AAAAAT 268819 ||||||||||||| || ||| | ||||| || | ||||| | |||||| || || Sbjct 3722040 TCTTTTTGGACTGCTGAGGAAATTGATCTTTCGAAAGACTTGGTTGATTGGGATAACAAG 3722099 Query 268820 TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGAT 268879 ||||| | || ||| | ||||| || | | || || | ||| || | ||| Sbjct 3722100 TTAAATGCTGATGAACGTTACTTTATTTCCACTGTACTCGCCTATTTCGCTGCGTCAGAT 3722159 Query 268880 GGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCC 268939 ||||| ||||| || ||||| | ||| ||| | || || ||||| |||||||| Sbjct 3722160 GGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGCTCTGAAGTTCAGATCCCTGAAGCT 3722219 Query 268940 AGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTA 268999 | ||| |||| || ||||| || || ||||||||||| || |||| ||| || Sbjct 3722220 CGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTACTCACTT 3722279 Query 269000 TTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TTCTATGA 269057 || | ||||| || || ||| || ||||| | || | |||| | |||| Sbjct 3722280 TTGCTTGATACATACATTCGTGAACCTAAGGAAAA--ACAGCGTCATTTCGATGCTATTT 3722337 Query 269058 GAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCG 269117 ||| |||| | | | | ||| | | |||||||| ||||| || ||| | Sbjct 3722338 TAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTAATGATGAAG 3722397 Query 269118 ---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGG 269174 | | || | | | || ||||| ||||| |||||||||||||| |||||||| | Sbjct 3722398 ATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCTTCTTTTCTG 3722457 Query 269175 GGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCT 269234 | || |||||| |||| |||||| | |||||| | || |||||||| || | ||||| | Sbjct 3722458 GATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTCTTACTTTTT 3722517 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTA 269294 | || |||||||| | | || || ||| | ||| |||||| || ||||| | |||| Sbjct 3722518 CCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTTTGATGTTTA 3722577 Query 269295 CTAATTATCTTTCACACAAACC--TTCTCAAGATAGAGTATACGAAATTATAGATTCAGC 269352 | ||| | |||| ||| | |||| | || | | ||||| | | ||| Sbjct 3722578 GTCATT---TGAAGCACAGACCAGGCCGCAAGGT--TGTTGAAGCCATTATTGTTGAAGC 3722632 Query 269353 TGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAA 269412 |||| | | || | ||||| | ||||| ||||| | | ||| | |||||||| Sbjct 3722633 TGTTGATATTGAGAAAGAATACTTCACGGACGCTCTTCCCGTTAGTCTGCTTGGTATGAA 3722692 Query 269413 TAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGG 269472 || | | |||| | |||||| | || || ||||| | ||| |||| |||| || Sbjct 3722693 TAAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTTGGTTGCTTTGGG 3722752 Query 269473 GTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGA 269532 | || | |||||||| ||||| || ||| ||||||||||| || |||| Sbjct 3722753 CAATGACAAGTACTATAACGTAACCAATCCTTTCGATTTCATGGAGAATATCTCTTTAGC 3722812 Query 269533 AGGTAAGGCTAATTTCTTCGAGAAG 269557 ||| || | |||||||| || ||| Sbjct 3722813 AGGAAAAACAAATTTCTTTGAAAAG 3722837 Score = 167 bits (184), Expect = 5e-36 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || ||||| || || || || ||||| | || || Sbjct 1045354 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1045413 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 1045414 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045473 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| |||||||| || | ||||||| || ||| || || | |||||||| Sbjct 1045474 CTGAATC-TTGCTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAG 1045532 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| ||||| | ||| || || || |||||||| Sbjct 1045533 TCTTTCCAGTTAATGTCTTGACGAAAATCTGCAT 1045566 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| ||||| || || ||||| || || || || ||||| | ||||| Sbjct 1044670 AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTC 1044729 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 1044730 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1044789 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| ||||| || || | ||| || || || || || | |||||| | Sbjct 1044790 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1044848 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| | ||||| ||||| || ||||| Sbjct 1044849 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 154 bits (170), Expect = 3e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||||| ||||| || || ||||| || || || || ||||| | || || Sbjct 1045126 AAGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1045185 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 1045186 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045245 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| ||||| || || | ||| || || || || || | |||||| | Sbjct 1045246 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1045304 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| | ||||| ||||| || ||||| Sbjct 1045305 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045338 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || ||||| || || || || ||||| | ||||| Sbjct 1044898 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTC 1044957 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 1044958 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1045017 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| ||||| || || | ||| || || || || || | |||||| | Sbjct 1045018 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1045076 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| | ||||| ||||| || ||||| Sbjct 1045077 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1045110 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | ||||| || || ||||| || || || || ||||| | || || Sbjct 1044442 AAGAACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATC 1044501 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 1044502 TTCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATC 1044561 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| ||||| || || | ||| || || || || || | |||||| | Sbjct 1044562 CTGAATC-TTGCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGG 1044620 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| | ||||| ||||| || ||||| Sbjct 1044621 TTTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044654 >seq1 Length=5579133 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || ||||| ||||| | ||| | ||||| || ||||| || ||| Sbjct 3238166 GTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCGAGTTGCTTGCCA 3238225 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || | | |||||||||||||| |||||||| ||||| || || |||||| || Sbjct 3238226 GCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGGAT-TTTGCTCTT 3238284 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | ||| ||||| || ||||| |||||||| ||||| || Sbjct 3238285 GACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTAAGGGT 3238344 Query 104542 TTTTACAAATATCTGCAT 104559 ||||||||| |||||||| Sbjct 3238345 TTTTACAAAGATCTGCAT 3238362 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||| || ||||| || ||||| ||||| | ||| || || | || ||||| Sbjct 2794528 GTGGACTCTTTTTGGATATTGTAATCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCG 2794587 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | |||||||||||||| |||||||| || ||||||||||| || Sbjct 2794588 GCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTGAATCTTACTCTTG 2794647 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || | ||| |||||||| || ||||| |||||||| | || Sbjct 2794648 ACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTTACCAGTCAAAGTC 2794707 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| |||||||| || Sbjct 2794708 TTGACAAAAATCTGCATCTT 2794727 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || ||||| | ||| | || ||||||| || || ||| Sbjct 3108684 GTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGCTTACCA 3108743 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || ||||| || | |||||||||||||| ||||||||||| || || || |||||| || Sbjct 3108744 GCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGAT-TTTGCTCTT 3108802 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || | || ||||| || ||||| |||||||| ||||| || Sbjct 3108803 GACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTAAGGGT 3108862 Query 104542 TTTTACAAATATCTGCATTTTG 104563 ||| || || || ||||||||| Sbjct 3108863 TTTGACGAAAATTTGCATTTTG 3108884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398340990832