Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq2 82.4 6e-11 >seq1 Length=5579133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| ||| ||||| || |||||||||| || || || | ||||| Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGA-AAGAGTACGACCATCCTC 2794574 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| | |||| || || || ||||| || | | |||||||||| Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || || || | || ||| ||| | ||||| ||||| Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || | ||| || ||||||||||||||| Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCATC 2794725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||||||| ||||| ||||||| ||| || ||||||| || ||| Sbjct 3238160 TGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCGAGTTGC 3238219 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || ||||| || ||||| || | | |||||| || ||||| Sbjct 3238220 TTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGGATTTTG 3238279 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | || || ||| | || ||||| ||||| || Sbjct 3238280 CTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTA 3238339 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 || ||||| ||||| ||||||||||| Sbjct 3238340 AGGGTTTTTACAAAGATCTGCATCGT 3238365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||||||| ||||||||||||| ||| || | || || | |||| Sbjct 3108678 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGC 3108737 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| | ||| || ||||| || | | ||| ||||| ||||| Sbjct 3108738 TTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 3108797 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || || | |||||| ||| | || || || ||||| || Sbjct 3108798 CTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTA 3108857 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||| ||||| Sbjct 3108858 AGGGTTTTGACGAAAATTTGCAT 3108880 >seq2 Length=4539804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || ||||||||||||||||||||| | || || || |||| || || || Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGA-AAGAGTACGTCCGTCTTCAAGTTG 1044966 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 |||||| | |||| | ||| || ||||| || | | |||||| ||| ||| || Sbjct 1044967 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045026 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | ||||| || | |||||| || | ||| ||||||||||| || Sbjct 1045027 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045086 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| |||||||| ||||| Sbjct 1045087 CAAGGTTTTGACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251179464004