Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 1e-14
seq2 82.4 6e-11
>seq1
Length=5579133
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || ||||| ||| ||| ||||| || |||||||||| || || || | |||||
Sbjct 2794516 ACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAGA-AAGAGTACGACCATCCTC 2794574
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| |||||| ||| | |||| || || || ||||| || | | ||||||||||
Sbjct 2794575 CAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAGGAATTCCTTCCTTGTCCTG 2794634
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||||| | | || || || | || ||| ||| | ||||| |||||
Sbjct 2794635 AATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCACCTCTAGGGTTATAGTTTT 2794694
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||| || | ||| || |||||||||||||||
Sbjct 2794695 ACCAGTCAAAGTCTTGACAAAAATCTGCATC 2794725
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||||||| ||||| ||||||| ||| || ||||||| || |||
Sbjct 3238160 TGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCGTCCTCGAGTTGC 3238219
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || | | || ||||| || ||||| || | | |||||| || |||||
Sbjct 3238220 TTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCTTATCTTGGATTTTG 3238279
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | || || || | || || ||| | || ||||| ||||| ||
Sbjct 3238280 CTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATGGTCTTACCCGTA 3238339
Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729
|| ||||| ||||| |||||||||||
Sbjct 3238340 AGGGTTTTTACAAAGATCTGCATCGT 3238365
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| ||| ||||||||| ||||||||||||| ||| || | || || | ||||
Sbjct 3108678 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGC 3108737
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
||||| || |||| | ||| || ||||| || | | ||| ||||| |||||
Sbjct 3108738 TTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 3108797
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||||| | | || || || | |||||| ||| | || || || ||||| ||
Sbjct 3108798 CTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGTA 3108857
Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| || ||||| |||||
Sbjct 3108858 AGGGTTTTGACGAAAATTTGCAT 3108880
>seq2
Length=4539804
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582
||||| || ||||||||||||||||||||| | || || || |||| || || ||
Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGA-AAGAGTACGTCCGTCTTCAAGTTG 1044966
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
|||||| | |||| | ||| || ||||| || | | |||||| ||| ||| ||
Sbjct 1044967 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045026
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | ||||| || | |||||| || | ||| ||||||||||| ||
Sbjct 1045027 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045086
Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726
| ||||| |||||||| |||||
Sbjct 1045087 CAAGGTTTTGACAAAAATTTGCAT 1045110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251179464004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |