Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=5579133 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 ||||| || | ||| | ||| || |||||||| | ||||||||| || ||| || | Sbjct 3238148 CGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGACAAAGTACGTCCG 3238207 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||| || || || || ||||||| || | ||| ||||| |||||||| ||||| | Sbjct 3238208 --TCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGGAATTCCTTCCT 3238265 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||||| |||||| | | | |||||||| | || || |||| || | Sbjct 3238266 TATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAA 3238325 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || ||||| ||||| |||||||||||||| Sbjct 3238326 TGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| || | ||| | ||| || |||||||| | ||| ||||| || ||| | Sbjct 3108666 CGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCA 3108725 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || | ||| || || | || || | | ||| ||||| |||||||| ||||||||| Sbjct 3108726 TCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTG 3108785 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||| | | |||||||| | || || |||| || || Sbjct 3108786 TCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATC 3108845 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || ||||| ||||| || || || ||||| Sbjct 3108846 GTCTTACCCGTAAGGGTTTTGACGAAAATTTGCAT 3108880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291177585440