Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-55 seq2 212 1e-50 >seq1 Length=5579133 Score = 228 bits (252), Expect = 1e-55 Identities = 215/274 (78%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | | |||||| || ||||| ||||| || || ||||| |||||| Sbjct 4699351 GCTAAGCGTCACCGTAAAATTCTTCGTGACAACATTCAAGGTATTACTAAGCCTGCTATC 4699292 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || |||||| | || | ||||| |||||||||| | Sbjct 4699291 CGTCGTCTTGCTCGTCGTGGTGGTGTGAAGCGTATTTCCGCTTTGGTTTATGAAGAGACT 4699232 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||| | ||| ||||| | | | ||||| | ||||| || |||||| ||| Sbjct 4699231 CGTGCTGTTCTCAAGCTCTTCTTAGAAAATGTTATTCGCGATGCCGTCACCTATACTGAG 4699172 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || |||||||||||||| || |||| | |||||| | ||||| ||||||||| Sbjct 4699171 CATGCCAAGCGTAAGACTGTCACTTCTTTGGACGTTGTCTATTCTTTGAAGCGTCAAGGC 4699112 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 |||| ||||||||||| || ||||| || ||| Sbjct 4699111 CGTACCATTTATGGTTTCGGTGGTTAAACTCCTA 4699078 >seq2 Length=4539804 Score = 212 bits (234), Expect = 1e-50 Identities = 211/271 (78%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| ||||| | |||| ||||| |||||||| ||||| || || ||||| || || Sbjct 1364778 GCTAAGCGCCATCGTAAGATC-CTTCGTGATAACATTCAAGGTATTACTAAGCCTGCCAT 1364720 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || || |||||| | |||| ||||| || ||||||| Sbjct 1364719 TCGTCGTCTTGCTCGTCGTGGCGGTGTTAAGCGTATTTCTGCTTTGGTTTACGAAGAGAC 1364660 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | ||| | | | |||||||| |||||| | ||| || || Sbjct 1364659 TCGTGCCGTTCTCAAGCTTTTCTTGGAAAACGTTATCCGTGATGCAGTTACCTACACTGA 1364600 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||||||||| ||| |||| | ||||| | ||||| |||||||| Sbjct 1364599 ACACGCCAAGCGTAAGACTGTCACTTCCTTGGACGTTGTCTACTCTTTGAAGCGTCAAGG 1364540 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||||| ||||||||||| || ||||| || Sbjct 1364539 CCGTACCATTTATGGTTTCGGTGGTTAAACT 1364509 Score = 197 bits (218), Expect = 2e-46 Identities = 206/268 (77%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | |||| ||||| || || || ||||| || || ||||| || || Sbjct 3529812 GCCAAGCGTCACCGTAAGATC-CTTCGTGACAATATTCAAGGTATTACTAAGCCTGCCAT 3529870 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||||||||||| || |||||| | || | || || || ||||||| Sbjct 3529871 TCGTCGTCTTGCTCGTCGTGGTGGTGTTAAGCGTATTTCCGCTTTAGTTTACGAAGAGAC 3529930 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| ||||| | | | ||||| | ||||||| || |||||| || Sbjct 3529931 TCGTGCTGTCCTCAAGCTCTTCTTGGAAAATGTTATTCGTGATGCTGTCACCTATACTGA 3529990 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||||||||| || || ||||| | ||||| | ||||| |||||||| Sbjct 3529991 GCATGCCAAGCGTAAGACTGTTACATCTTTGGATGTTGTCTACTCTTTGAAGCGTCAAGG 3530050 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| ||||||||||| || ||||| Sbjct 3530051 CCGTACCATTTATGGTTTCGGTGGTTAA 3530078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075196342772