Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 >seq2 Length=4539804 Score = 159 bits (176), Expect = 4e-34 Identities = 369/550 (67%), Gaps = 6/550 (1%) Strand=Plus/Minus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 |||| || ||| |||| | ||||| || |||||||| |||||| | || || ||| | Sbjct 3722856 TTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCT 3722797 Query 21246 CCATAAAATCAAATGGATTT-TCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 |||| ||||| || ||||| | | || | || || | | |||| | || Sbjct 3722796 CCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTG-TCATTGCCCAAAGCAACCAAC 3722738 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 || | ||| || |||||||| ||||| |||||||| || || ||||||||| | || Sbjct 3722737 AAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTATTCATACCAAGCAGA 3722678 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 | || |||||||| | || || | ||| || ||| || ||||||||||| || Sbjct 3722677 CTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACAGCTTCAACAATAATG 3722618 Query 21425 --TTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAA 21482 || | | ||| | | || | | | | || || ||||||||||||| |||| Sbjct 3722617 GCTTCAACAACCTTGCGGC-CTGGTCTG-TGCTTCAAATGACTAAACATCAAACAGGCAA 3722560 Query 21483 AATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCA 21542 | || || | ||| ||||| | || || |||||||| ||||| || | ||| |||| Sbjct 3722559 AGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAAAAGTAAGACCAGGCA 3722500 Query 21543 TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCT 21602 | | ||| | || || | |||||| || || ||||| | ||| |||||||| || || | Sbjct 3722499 TAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAGAAAAGAAGATACCTT 3722440 Query 21603 CAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATT 21662 | || |||||||| ||||| || || | || || || |||| ||| ||||| Sbjct 3722439 CTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTTCATCATTAATCCAAC 3722380 Query 21663 TTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGAT 21722 ||||| || || || | |||||| || | ||||| |||||| | ||| || Sbjct 3722379 GAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAATAGCATCGAAATGAC 3722320 Query 21723 GAtttttttC 21732 | | |||||| Sbjct 3722319 GCTGTTTTTC 3722310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900773404960