Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 300 2e-76 seq2 230 3e-55 >seq1 Length=5579133 Score = 300 bits (332), Expect = 2e-76 Identities = 1400/2202 (64%), Gaps = 53/2202 (2%) Strand=Plus/Minus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 ||||| |||||||||||||| || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 62085 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62144 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 62145 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTT 62204 || | || | ||| ||||| | || | |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 62205 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 62261 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 62262 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62321 | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 62322 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62381 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 62382 GTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62441 ||||| || || | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 62442 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62501 ||||| || || ||| ||| | || |||| | | || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 62502 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62561 |||| ||||||||| | || ||| |||| |||||| ||| Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981 Query 62562 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 62617 | | | |||||| |||| | || |||| || || || || | || ||| Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 62618 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTG-CT 62675 ||||| | || ||| ||||| ||||||||||| | | ||||| | |||| | Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861 Query 62676 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACAC 62733 | ||| | | ||||| ||| ||||| || ||| || || || | |||||||||| Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805 Query 62734 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 62792 | | ||| | || | ||| | | |||| | | | |||||| |||| ||||||||| Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746 Query 62793 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62852 |||| || ||||| || ||||| || | || || || || ||||| | || || Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686 Query 62853 AGAAAATCAAATCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAA 62912 | |||| | || ||| | | ||| || ||| ||||| || || || |||||| Sbjct 4228685 TGGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAA 4228626 Query 62913 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 62972 || || || || | || | | |||| | |||||||| || || || || Sbjct 4228625 ACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGA 4228566 Query 62973 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63032 ||||| || | ||| | ||||| ||| ||| || | ||||||||| | ||||| Sbjct 4228565 ATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAA 4228506 Query 63033 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 63092 ||| |||||||||||| || |||| | ||| || | ||| || | |||| || | Sbjct 4228505 GGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTAAT 4228446 Query 63093 ATA----GATTT-GTATCTCCTTTCTC-----TTTCGTATAGTGTATACAATCGTTCGAA 63142 | || | ||||||| ||| ||||||| || | | |||| | Sbjct 4228445 GAACGACGACCACGGTTCTCCTT-CTCATACTTTTCGTAGAGGGCA-ACAA--------A 4228396 Query 63143 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 63202 |||||| |||||||||| |||| || ||| |||| || || | || | ||| | Sbjct 4228395 CTCGTCACCCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTG 4228336 Query 63203 TCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261 ||| | | |||| | |||| |||||| | ||||||||||| | || ||| | | || Sbjct 4228335 CTCGTTA-CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACAT 4228279 Query 63262 CTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63319 || || | | |||||||| || | ||||| ||| || | || |||||| Sbjct 4228278 TTCGCGTGCGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAAC 4228219 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||| | |||||| || ||||| || || | | ||||| || || || ||||| || Sbjct 4228218 ATCGGCATGCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTG 4228159 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63439 || | || | ||| ||||| || ||||| | | ||| || | ||| ||||| || | Sbjct 4228158 GTCAACATAACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGT 4228099 Query 63440 ACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 63499 |||||| || || | ||||| || | || | ||| || ||| | ||| || Sbjct 4228098 ACCATTAGTTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAAT 4228039 Query 63500 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTAT 63559 || || || | || ||||| | || || || | ||||| ||||| || || || Sbjct 4228038 ACCGCCAGCGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAAT 4227979 Query 63560 GCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 63619 || || |||| ||| || ||||| ||| | |||| ||||| ||| || || Sbjct 4227978 AGAGTCGTCTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGC 4227919 Query 63620 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63679 ||| || | || || ||||| || ||||| | || ||| | | |||||| || || Sbjct 4227918 ATTGAAAAGAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTC 4227859 Query 63680 AATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63738 |||||| | || || ||| || | || || || || ||||||||||| | ||| |||| Sbjct 4227858 AATAGCAGCTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCT 4227800 Query 63739 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63798 |||| | ||| | | ||| || || ||| || || || || ||||| || | Sbjct 4227799 GAGGGCGCTCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGA 4227740 Query 63799 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCT 63858 | ||||| | ||||| | || || || ||||| || ||| | | | || |||| Sbjct 4227739 AGCCAAAGAAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCT 4227680 Query 63859 TATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTT 63918 | | ||| | || ||||| | | | || || || || | | | || | ||| Sbjct 4227679 TGTGTTTCATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTT 4227620 Query 63919 TAGGATTAACATAGT--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63976 | ||||| ||||||| |||| | | || || | ||| | || | |||| Sbjct 4227619 TGGGATTTACATAGTCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTG 4227562 Query 63977 CTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGT 64036 ||| || | || || || || ||||| || || | ||| |||||||| ||||| | ||| Sbjct 4227561 CTTATGCAAGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGT 4227502 Query 64037 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 ||| ||| || || |||| || || | | | |||||||| | || || || || Sbjct 4227501 AGTCATAGTCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGG 4227442 Query 64097 ATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAA 64156 ||| | || ||| || || || |||| | ||||| | |||||| | | | Sbjct 4227441 ATACACACCAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAG 4227382 Query 64157 GCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAA 64198 ||||||||| | | || ||||| |||||||| ||||| Sbjct 4227381 GCCATAACAAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 230 bits (254), Expect = 3e-55 Identities = 591/895 (66%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 |||||||| || ||||||| ||| || ||||| || ||||| ||||||||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 | || || ||||| ||||||||||| || |||||||| || ||||| || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 ||||| || | ||| | ||| || || ||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || | || |||| |||||||| | || | |||||| ||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 33238 GCATCTGTTATAATAGATCTAACGG--TTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295 || || ||||| | | ||| || | | || ||| ||| ||||| ||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575 Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||||||||| || || ||| ||| |||||||| || | || ||| | ||| ||||||| Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||| || ||||| || ||||||||||| || || || || ||||||| Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGC 33472 |||||||||| |||||||| ||||||||||||| | | | |||| || | Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 |||| ||||| ||||||| | ||| || || | | || ||| ||| | Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 | |||| || || | |||||| ||| || || || ||||| | |||||| Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 || | || || ||||| |||||||| || || || || || | ||| | ||| | Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 | | ||||| ||||| | | || || || | ||| ||||| || || || || Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTT 33769 || || ||| | || | |||| ||||| || ||| || | ||| | Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 ||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| | Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035 Query 33830 CTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | ||||| || || | | ||| || || | ||| | ||||| || | |||||| Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947168852640