Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 5e-13
>seq2
Length=4539804
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| ||||| || ||||| ||| | || || | ||| | || ||
Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || || |||||| || || ||||| || ||||| ||||||
Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || |||| | || || ||||| ||||||| | | | || || |||
Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045159
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||| || |||||| | ||||| || ||
Sbjct 1045158 ATTCAAAAGGAGTCTACTCTACATCTTGTTCT 1045127
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 119661 TTTTCaaaaaaaTTAGTCTTGCC--CTCAAGAGATATGTTATTCATAAACTCGAAAGGAT 119718
|||||||| ||||| || || || || ||||||||| | | ||| || ||||||||||
Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATAT--TCTCCATGAAATCGAAAGGAT 3722779
Query 119719 TTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACT 119778
| | ||| | | |||||| | |||||| | | ||||| ||||| || ||||| |
Sbjct 3722778 TGGTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATT 3722719
Query 119779 CGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGG 119838
| || || | ||||| | | | |||||| || | || | || || | ||| | |
Sbjct 3722718 CAATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCG 3722659
Query 119839 TAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAA 119874
| ||| | || || ||||| || || ||||| ||||
Sbjct 3722658 TGAAGTATTCTTTCTCAATATCAACAGCTTCAACAA 3722623
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| ||||| || ||||| ||| | || || | ||| | || ||
Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || || |||||| || || ||||| || ||||| ||||||
Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || |||| | || || ||||| ||||||| | | | || || |||
Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1044475
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||| || |||||| | || || || ||
Sbjct 1044474 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCT 1044443
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | ||||| ||||| || ||||| ||| | || || | ||| | || ||
Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| || | || || |||||| || || ||||| || ||||| ||||||
Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || |||| | || || ||||| ||||| | | | | || || |||
Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAGATTACAAC 1044703
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||| || |||||| | ||||| || ||
Sbjct 1044702 ATTCAAAAGGAGTCTACTCTACATCTTGTTCT 1044671
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || |||||||||||||| | || || | ||| | ||||| |
Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||| || | || || |||||| || || ||||| || ||||| ||||||
Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || |||| | || || ||||| ||||||| | | | || || |||
Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAGATTACAAC 1045387
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||||||| || |||||| | || || || ||
Sbjct 1045386 ATTCAAAAGGAGTCTACTCTTCACCTTGTTCT 1045355
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478662376066880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |