Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 340 5e-88 seq2 183 8e-41 >seq1 Length=5579133 Score = 340 bits (376), Expect = 5e-88 Identities = 732/1077 (68%), Gaps = 32/1077 (3%) Strand=Plus/Plus Query 363427 CGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGT 363486 |||||| | || | ||| ||| ||||| ||||||||| | |||||||| || ||||| Sbjct 4227769 CGTATCGACGGCAAAGTTGCTGAGCGCCCTCAGCATATGATTATGCGTGTCGCCGTTGGT 4227828 Query 363487 ATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTG-- 363544 ||||| | ||| |||| || || ||||||||||| || || | || ||| Sbjct 4227829 ATCCACGGTGAGGACATTGAAGCTGCTATTGAAACATACAA--TTTGATGT-CTCAACGC 4227885 Query 363545 TA-TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCT 363603 || || || || || | ||||| | | |||||| || |||| | ||| || | ||| Sbjct 4227886 TACTTTACCCATGCTTCACCAACTCTTTTCAATGCCGGTACTCCTCGTCCCCAACTCTCT 4227945 Query 363604 TCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAG 363663 ||||| || || | | ||||| ||||| || || || || |||| |||||||| ||| Sbjct 4227946 TCTTGTTTCCTCGTTACGATGAAAGACGACTCTATTGAAGGAATCTACGACACACTCAAG 4228005 Query 363664 AATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT 363723 | |||||| | || ||||||| || ||||| |||||| | || ||||| || | Sbjct 4228006 ATGTGTGCTATGATCTCCAAGACCGCTGGCGGTATTGGTATTAATATTCACAACATTAGA 4228065 Query 363724 GCACAGAACAGTT---ACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCAT 363779 ||| | | ||| | ||| || || || |||| | || || | || ||||| Sbjct 4228066 GCA---ACCGGTTCGTATATTGCTGGAACTAATGG-TACTTCCAACGGAATTGTCCCCAT 4228121 Query 363780 GCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | ||||||| | |||| || || | || || ||||| || || ||||| || Sbjct 4228122 GATTCGTGTTTACAACAACACAGCTCGTTATGTTGACCAAGGAGGTAATAAGCGTCCTGG 4228181 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| ||| | |||||| ||||||||| || | || ||| | || || || Sbjct 4228182 TGCCTTTGCAGCCTATTTGGAGCCTTGGCATGCCGATGTTATGGACTTTTTAGAACTTCG 4228241 Query 363900 GAAAAACACG-GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTT 363958 ||| || | || || ||||| || || ||||| || |||||||||| | ||| || Sbjct 4228242 -AAAGACTCATGGCAACGAGGATTTCCGCGCACGCGAAATGTTCTATGCCTTGTGGATTC 4228300 Query 363959 CTGACCATTTTATGAAGCGCGTGGAGGCAGGTAA---GAATTGGTCACTCTTTTGCCCAC 364015 ||||| |||||| | || || || | |||| | | ||| | |||| ||||| Sbjct 4228301 CTGACTTGTTTATGCAACGTGTTGA---ACGTAACGAGCAATGGACCTTCTTCTGCCCCA 4228357 Query 364016 ACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGT 364075 | || ||||||| | | ||||| ||||||||||| | |||||| || |||||||||| Sbjct 4228358 ATGAGGCTCCAGGTTTGGCAGATGTTTGGGGTGACGAGTTTGTTGCCCTCTACGAAAAGT 4228417 Query 364076 ATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCA 364135 |||| |||| | |||| || | || || || || | |||| ||||| Sbjct 4228418 ATGAGAAGGAGAACCGTGGTCGTCGTTCATTACCTGCTCAAAAAGTTTGGTACGCCATTC 4228477 Query 364136 TGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCA 364195 | | || || |||| || || | || | |||||||| || ||||| |||||||| | Sbjct 4228478 TTCAATCACAAGTTGAAACTGGTAATCCTTTCATGTTGTATAAGGATTCATGCAACCGTA 4228537 Query 364196 AGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATT 364254 ||||||| ||| || | ||||||| |||| || | | ||||| ||||| |||||| || Sbjct 4228538 AGTCCAATCAGAAGAATGTTGGTACTATTC-GCTGCTCAAACCTGTGTACTGAGATTGTT 4228596 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314 |||||| | |||| ||||| ||| || ||||||||||| || | || | || | Sbjct 4228597 GAATACTCTTCTCCTGACGAAGTTGCTGTTTGTAACCTTGCTTCAGTTGCTTTGCCCACA 4228656 Query 364315 TTTGTAAAAGATG----GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 ||| | ||||| | |||| || ||| ||| || ||| ||| | | | Sbjct 4228657 TTTATTAAAGACGGAAAGTACAATT-TCCAAAAGCTTCACGATGTCGTGA---AGGTCGT 4228712 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCG 364430 |||| | || ||| ||||| |||||||| || |||||||| |||||||||| || Sbjct 4228713 TACTCGTAACCTCAACAAGATTATCGACGTTAACTATTATCCTGTTCCTGAAGCTCGCCG 4228772 Query 364431 TTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTT 364487 | |||||||| ||||| || ||||| | ||||| || || || || || | ||| Sbjct 4228773 TAGCAATATGCGCCATCGTCCCGTTGGTTTGGGTGTTCAAGGTCTTGCCGATGCTTT 4228829 >seq2 Length=4539804 Score = 183 bits (202), Expect = 8e-41 Identities = 485/730 (66%), Gaps = 28/730 (4%) Strand=Plus/Plus Query 22235 CAGACGGTATAGTTTTTGAGAATCTAGT-GACTAATTTTGCATCTGAAATTCAATACCCA 22293 |||| ||||| ||| ||||||||| | || || || |||||| |||| ||| Sbjct 3722155 CAGATGGTATTGTTAATGAGAATCTTCTCGAGCGTTTCAGC-TCTGAAGTTCAGATCCCT 3722213 Query 22294 GAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGGAAACATAT 22353 || || | ||| | |||||| | ||||| |||||||||||| ||||| | || || || Sbjct 3722214 GAAGCTCGTTGTGTTTATGGTTTCCAAATTATGATTGAAAATATTCACTCTGAGACCTAC 3722273 Query 22354 TCTATGATGCT----ACAGTCACTCGTAGAAGATAAAGACGAACAACGAAACTTATTCCG 22409 || | |||| ||| || |||| ||| ||| || |||| || | ||| || Sbjct 3722274 TCACTTTTGCTTGATACATACATTCGT-GAACCTAAGGAAAAACAGCG----TCATTTCG 3722328 Query 22410 C-GCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGA 22468 || ||| || || || |||||| || || | ||||| || ||||| | Sbjct 3722329 ATGCTATTTTAACAATGGGTTCTATTAAGGCCAAAGCCAAGTGGGCTCTTCGTTGGATTA 3722388 Query 22469 ACAATGAACGTTCATTCGCGGAA---CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTT 22525 | ||||| ||| | | | ||| | |||| ||||||| || ||||| || | Sbjct 3722389 ATGATGAAGATTCCACCTATGCAATTCGTTTGGTTGCCTTTGCTGCTGTAGAAGGTATCT 3722448 Query 22526 TCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTC 22585 ||||||||||| | ||| | || |||||||| || ||||||| | ||||||| |||| Sbjct 3722449 TCTTTTCTGGATCGTTTGCCTCTATTTTTTGGCTTAAGAAACGTGGACTTATGCCTGGTC 3722508 Query 22586 TAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTA 22645 | || ||||| ||||| || ||| | || |||||||||||||| ||||| ||||| ||| Sbjct 3722509 TTACTTTTTCCAATGAATTGATTTGTCGTGATGAGGGTCTTCACACCGACTTTGCCTGTT 3722568 Query 22646 TGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGA---TATTA 22702 || | | | | |||| | | || | | ||| | || |||| |||| Sbjct 3722569 TGATGTTT---AGTCATTTGAAGCACAGA---CCAGGCCGCAAGGTTGTTGAAGCCATTA 3722622 Query 22703 TTACAAATGCAGTTGAACTT--GAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCT 22760 || | || ||||| || ||| | || | | || || | || || ||||| Sbjct 3722623 TTGTTGAAGCTGTTGATATTGAGAAAGAATACT--TCACGGACGCTCTTCCCGTTAGTCT 3722680 Query 22761 CATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATT 22820 ||||||| ||| || | ||| || |||||| |||||||||| |||||| | || Sbjct 3722681 GCTTGGTATGAATAAGGATTTGATGTGTCAGTATATTGAATTTGTTGCTGATCGTTTGTT 3722740 Query 22821 AATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACT 22880 || | | || ||| ||| | |||||||| ||||| || || | ||||| Sbjct 3722741 GGTTGCTTTGGGCAATGACAAGTACTATAACGTAACCAATCCTTTCGATTTCATGGAGAA 3722800 Query 22881 TATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||| || | | |||||| || |||||||| ||||| | |||| ||| ||||||| || Sbjct 3722801 TATCTCTTTAGCAGGAAAAACAAATTTCTTTGAAAAGAAAGTTTCTGACTACCAAATTGC 3722860 Query 22941 AGGTGTTATG 22950 || |||||| Sbjct 3722861 TGGCGTTATG 3722870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353533203128