Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 84.2 2e-11 >seq2 Length=4539804 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| || || |||||||| ||||| |||||| Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168 || | || |||| | || |||||||| ||||||| || | | | ||| |||| | Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAG--ATTACA 1044477 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||||||||| || ||||| |||| Sbjct 1044476 ACATTCAAAAGGAGTCTACTCTTCA 1044452 Score = 102 bits (112), Expect = 7e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| || || |||||||| ||||| |||||| Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168 || | || |||| | || |||||||| ||||||| || | | | ||| |||| | Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAG--ATTACA 1045161 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||| || ||||| Sbjct 1045160 ACATTCAAAAGGAGTCTAC 1045142 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| || || |||||||| ||||| |||||| Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168 || | || |||| | || |||||||| ||||| | || | | | ||| |||| | Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAG--ATTACA 1044933 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||||||||| || ||||| |||| Sbjct 1044932 ACATTCAAAAGGAGTCTACTCTTCA 1044908 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| | Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || |||||| || || |||||||| ||||| |||||| Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168 || | || |||| | || |||||||| ||||| | || | | | ||| |||| | Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAG--ATTACA 1044705 Query 24169 ACATTCAAAAAGAATCTAC 24187 |||||||||| || ||||| Sbjct 1044704 ACATTCAAAAGGAGTCTAC 1044686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || |||||||||||||| | ||||| | ||||| || | | Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || || |||||| || || |||||||| ||||| |||||| Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168 || | || |||| | || |||||||| |||||| ||| | | ||| ||||| | Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCA--GATTACA 1045389 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 |||||||||| || ||||| |||| Sbjct 1045388 ACATTCAAAAGGAGTCTACTCTTCA 1045364 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104608 TTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTC 104667 |||||||| ||||| || || || | | ||| ||||| | ||| || ||||||||||| Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTG 3722777 Query 104668 AAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCG 104727 ||| | || || || | ||| | | | ||||| ||||| || |||||||| Sbjct 3722776 GTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCA 3722717 Query 104728 ATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTa 104787 || |||| ||||| ||| |||||| || |||| ||||| | ||||| || Sbjct 3722716 ATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTG 3722657 Query 104788 aaaaaaTCTTTCTCGATGTCCACGGCTTC 104816 || | |||||||| || || || ||||| Sbjct 3722656 AAGTATTCTTTCTCAATATCAACAGCTTC 3722628 >seq1 Length=5579133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||| |||||||||| | || || ||||| | || || || |||||||| | || || | Sbjct 3108888 CAACCAAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGG 3108829 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || || ||||| || || | ||||| || || ||||||||||| || |||| Sbjct 3108828 AGTCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTC 3108769 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 | |||||||| | || |||| || || ||||| | ||||||| | | | | Sbjct 3108768 CTGATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTG 3108709 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCA 24193 |||| ||||| ||||| || || || |||| Sbjct 3108708 ATTACAACATCCAAAAGGAGTCCACTCTTCA 3108678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935979040620