Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2 104 2e-17
seq1 84.2 2e-11
>seq2
Length=4539804
Score = 104 bits (114), Expect = 2e-17
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| |
Sbjct 1044654 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044595
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || |||||| || || |||||||| ||||| ||||||
Sbjct 1044594 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044535
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168
|| | || |||| | || |||||||| ||||||| || | | | ||| |||| |
Sbjct 1044534 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAG--ATTACA 1044477
Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193
|||||||||| || ||||| ||||
Sbjct 1044476 ACATTCAAAAGGAGTCTACTCTTCA 1044452
Score = 102 bits (112), Expect = 7e-17
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| |
Sbjct 1045338 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045279
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || |||||| || || |||||||| ||||| ||||||
Sbjct 1045278 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045219
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168
|| | || |||| | || |||||||| ||||||| || | | | ||| |||| |
Sbjct 1045218 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCAG--ATTACA 1045161
Query 24169 ACATTCAAAAAGAATCTAC 24187
|||||||||| || |||||
Sbjct 1045160 ACATTCAAAAGGAGTCTAC 1045142
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| |
Sbjct 1045110 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1045051
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || |||||| || || |||||||| ||||| ||||||
Sbjct 1045050 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044991
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168
|| | || |||| | || |||||||| ||||| | || | | | ||| |||| |
Sbjct 1044990 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAG--ATTACA 1044933
Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193
|||||||||| || ||||| ||||
Sbjct 1044932 ACATTCAAAAGGAGTCTACTCTTCA 1044908
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||| |
Sbjct 1044882 ATGCAAATTTTTGTCAAAACCTTGACTGGTAAAACCATTACATTGGAAGTTGAGTCTTCT 1044823
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || |||||| || || |||||||| ||||| ||||||
Sbjct 1044822 GACACCATTGATAACGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1044763
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGT-CAGCGATTATA 24168
|| | || |||| | || |||||||| ||||| | || | | | ||| |||| |
Sbjct 1044762 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGACGGACGTACTCTTTCAG--ATTACA 1044705
Query 24169 ACATTCAAAAAGAATCTAC 24187
|||||||||| || |||||
Sbjct 1044704 ACATTCAAAAGGAGTCTAC 1044686
Score = 95.1 bits (104), Expect = 1e-14
Identities = 146/205 (71%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || |||||||||||||| | ||||| | ||||| || | |
Sbjct 1045566 ATGCAGATTTTCGTCAAGACATTAACTGGAAAGACTATTACATTGGAAGTTGAATCTTCC 1045507
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| || | || || |||||| || || |||||||| ||||| ||||||
Sbjct 1045506 GATACCATTGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 1045447
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTATA 24168
|| | || |||| | || |||||||| |||||| ||| | | ||| ||||| |
Sbjct 1045446 CAACGTCTTATTTTTGCTGGTAAGCAACTTGAAGATGGACGTACTCTTTCA--GATTACA 1045389
Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193
|||||||||| || ||||| ||||
Sbjct 1045388 ACATTCAAAAGGAGTCTACTCTTCA 1045364
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 104608 TTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATAAATTCGAAAGGATTC 104667
|||||||| ||||| || || || | | ||| ||||| | ||| || |||||||||||
Sbjct 3722836 TTTTCAAAGAAATTTGTTTTTCCTGCTAAAGAGATATTCTCCATGAAATCGAAAGGATTG 3722777
Query 104668 AAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGATCCGCCACAAATTCG 104727
||| | || || || | ||| | | | ||||| ||||| || ||||||||
Sbjct 3722776 GTTACGTTATAGTACTTGTCATTGCCCAAAGCAACCAACAAACGATCAGCAACAAATTCA 3722717
Query 104728 ATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACGGGTAAAGCGTTAGTa 104787
|| |||| ||||| ||| |||||| || |||| ||||| | ||||| ||
Sbjct 3722716 ATATACTGACACATCAAATCCTTATTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTG 3722657
Query 104788 aaaaaaTCTTTCTCGATGTCCACGGCTTC 104816
|| | |||||||| || || || |||||
Sbjct 3722656 AAGTATTCTTTCTCAATATCAACAGCTTC 3722628
>seq1
Length=5579133
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042
||| |||||||||| | || || ||||| | || || || |||||||| | || || |
Sbjct 3108888 CAACCAAAATGCAAATTTTCGTCAAAACCCTTACGGGTAAGACGATTACCCTTGAGGTGG 3108829
Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102
|| || ||||| || || | ||||| || || ||||||||||| || ||||
Sbjct 3108828 AGTCCTCTGACACTATTGATAATGTCAAGAGCAAAATCCAAGACAAAGAAGGAATTCCTC 3108769
Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162
| |||||||| | || |||| || || ||||| | ||||||| | | | |
Sbjct 3108768 CTGATCAACAACGTCTTATTTTCGCTGGTAAGCAGTTAGAAGATGGACGTACTTTGTCTG 3108709
Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCA 24193
|||| ||||| ||||| || || || ||||
Sbjct 3108708 ATTACAACATCCAAAAGGAGTCCACTCTTCA 3108678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429935979040620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |