Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq2 84.2 2e-11 >seq1 Length=5579133 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| ||||||||||| | | || | | ||| Sbjct 3969220 AGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTACGGCCATCC 3969161 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || ||||| || || || | ||||| || |||||||| ||| | || || ||||| Sbjct 3969160 TCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCT 3969101 Query 16844 -GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | |||||| ||| || | | | | |||||| || |||| || | |||||| || Sbjct 3969100 TGGATTTTGCT-CTTGACATTGTCAATAGTGTCAGAGGACTCCACCTCAAGGGTGATAGT 3969042 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| || ||||| ||||||||||| Sbjct 3969041 CTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 3969009 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| || | || || | || || || || Sbjct 3108678 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGACAAAGTACGTCCATCTTCTAACTGC 3108737 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC-GGCAATTTG 16851 || || || ||||||| || ||||| || ||| | || |||||||| | | |||| Sbjct 3108738 TTACCAGCGAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTG 3108797 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || ||| || | | | |||||| || |||| || | ||| || || || || || Sbjct 3108798 CT-CTTGACATTATCAATAGTGTCAGAGGACTCCACCTCAAGGGTAATCGTCTTACCCGT 3108856 Query 16912 CAGCGTTTTGACAAAAATCTGCATTTTG 16939 || |||||||| ||||| ||||||||| Sbjct 3108857 AAGGGTTTTGACGAAAATTTGCATTTTG 3108884 >seq2 Length=4539804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| |||||||| || | | || |||| Sbjct 1044671 AGAACAAGATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCT 1044730 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| || || ||| ||||||| || ||||| || ||| | ||| || || || Sbjct 1044731 TCAAGTTGCTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCC 1044790 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||||| ||| || | | | ||||| | ||| ||||| || ||||| Sbjct 1044791 TGAATCTTGCT-CTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGT 1044849 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || |||| |||||||||||||| ||||| Sbjct 1044850 TTTACCAGTCAAGGTTTTGACAAAAATTTGCAT 1044882 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||| || | | || |||| || | ||| Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGC 1044967 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || ||| ||||||| || ||||| || ||| | ||| || || || ||| ||| Sbjct 1044968 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045027 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || ||| || | | | ||||| | ||| ||||| || |||||||| || || Sbjct 1045028 CT-CTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045086 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || |||||||||||||| ||||| Sbjct 1045087 CAAGGTTTTGACAAAAATTTGCAT 1045110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087980251960