Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 9e-27
seq2 129 4e-25
seq3 123 2e-23
>seq1
Length=5579133
Score = 134 bits (148), Expect = 9e-27
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||| ||||||||| ||| ||||| |||||||||||||
Sbjct 2794496 TACCACCACGAAGACGGAGAACCAAGTGAAGAGTGGACTCTTTTTGGATATTGTAATCAG 2794555
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | ||| | || || || || ||||||||||| || | ||||||||||| | |
Sbjct 2794556 AAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGTTGATCAGGAG 2794615
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| |||||| ||| || ||| ||||| | | ||| || ||| |
Sbjct 2794616 GAATTCCTTCCTTGTCCTGAATCTTACTCTTGACATTGTCAATAGTGTCAGAGGATTCCA 2794675
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322
| |||| || ||||||||||| ||||| || || || || |||||||| ||||
Sbjct 2794676 CCTCTAGGGTTATAGTTTTACCAGTCAAAGTCTTGACAAAAATCTGCATCTTTT 2794729
Score = 129 bits (142), Expect = 4e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||| || | ||||||||| ||||||||| || |||||||||||
Sbjct 3108653 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGA 3108712
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| |||| | || ||||| || || || || || || || ||||||||||| | ||
Sbjct 3108713 CAAAGTACGTCCATCTTCTAACTGCTTACCAGCGAAAATAAGACGTTGTTGATCAGGAGG 3108772
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||||||||| ||||| ||| ||||| | | ||| || || ||
Sbjct 3108773 AATTCCTTCTTTGTCTTGGATTTTGCTCTTGACATTATCAATAGTGTCAGAGGACTCCAC 3108832
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | ||||| || |||||||| | |||||| ||||| || ||||| ||
Sbjct 3108833 CTCAAGGGTAATCGTCTTACCCGTAAGGGTTTTGACGAAAATTTGCATTTT 3108883
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | | |||||| || | ||||||||| ||||||||| || || ||||||||
Sbjct 3238135 ACCACCACGAAGACGCAAAACGAGGTGAAGAGTGGACTCCTTTTGGATGTTATAATCAGA 3238194
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| |||| |||| || | ||| || || ||||| || | ||||||||||| | ||
Sbjct 3238195 CAAAGTACGTCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAAACGTTGTTGATCAGGAGG 3238254
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| || || ||||| ||| ||||| | | ||| || ||||||
Sbjct 3238255 AATTCCTTCCTTATCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGATTCAAC 3238314
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| || |||||||| | |||||| || || ||||||||
Sbjct 3238315 CTCAAGGGTAATGGTCTTACCCGTAAGGGTTTTTACAAAGATCTGCAT 3238362
Score = 105 bits (116), Expect = 4e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | || |||||||| || |||||||||||| ||||| ||||
Sbjct 3969237 TACCACCACGAAGACGGAGAACTAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAG 3969178
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | ||| | || |||||||| ||||| || || || || |||||||| || | |
Sbjct 3969177 AAAGAGTACGGCCATCCTCTAATTGCTTTCCAGCGAAGATAAGACGTTGTTGGTCAGGAG 3969118
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| ||||| ||||| ||| ||||| | | ||| || || |
Sbjct 3969117 GAATTCCTTCCTTGTCTTGGATTTTGCTCTTGACATTGTCAATAGTGTCAGAGGACTCCA 3969058
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
| || | || ||||| || || ||||| || || ||||| ||||||||| ||
Sbjct 3969057 CCTCAAGGGTGATAGTCTTTCCGGTCAAAGTCTTGACGAAAATCTGCATGATT 3969005
>seq2
Length=4539804
Score = 129 bits (142), Expect = 4e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|||||||| |||||||||||| |||||||| || | | |||| | || || | |||
Sbjct 1045364 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1045423
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||| | || | |||||| || ||| ||| ||
Sbjct 1045424 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045483
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| ||||| | | ||||| | ||||||||| ||||||||||| || || ||
Sbjct 1045484 CTCTTTACATTGTCAATGGTATCGGAAGATTCAACTTCCAATGTAATAGTCTTTCCAGTT 1045543
Query 38295 AAGGTTTTCACGAATATCTGCATG 38318
|| || || ||||| |||||||||
Sbjct 1045544 AATGTCTTGACGAAAATCTGCATG 1045567
Score = 127 bits (140), Expect = 1e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|||||||| |||||||||||| |||||||| || | | |||| |||| || | |||
Sbjct 1044908 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTGC 1044967
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||| | || | |||||| || ||| ||| ||
Sbjct 1044968 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1045027
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| || || | | || || | |||||||| |||||||| |||||||| |||
Sbjct 1045028 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1045087
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
|||||||| || || || |||||
Sbjct 1045088 AAGGTTTTGACAAAAATTTGCAT 1045110
Score = 125 bits (138), Expect = 5e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||| ||||| |||||||||||| |||||||| || | | |||| |||| || | |||
Sbjct 1044679 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCGTCTTCAAGTTG 1044738
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
|| || ||||| || || ||||||||||| | || | |||||| || ||| ||| ||
Sbjct 1044739 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1044798
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| || || | | || || | |||||||| |||||||| |||||||| ||
Sbjct 1044799 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1044858
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
||||||||| || || || |||||
Sbjct 1044859 CAAGGTTTTGACAAAAATTTGCAT 1044882
Score = 123 bits (136), Expect = 2e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|||||||| |||||||||||| |||||||| || | | |||| | || || | |||
Sbjct 1044452 TGAAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTGC 1044511
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||| | || | |||||| || ||| ||| ||
Sbjct 1044512 TTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTTG 1044571
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| || || | | || || | |||||||| |||||||| |||||||| |||
Sbjct 1044572 CTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGTC 1044631
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
|||||||| || || || |||||
Sbjct 1044632 AAGGTTTTGACAAAAATTTGCAT 1044654
Score = 120 bits (132), Expect = 2e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
||| ||||| |||||||||||| |||||||| || | | |||| | || || | |||
Sbjct 1045135 ATGTAGAGTAGACTCCTTTTGAATGTTGTAATCTGAAAGAGTACGTCCATCTTCAAGTTG 1045194
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
|| || ||||| || || ||||||||||| | || | |||||| || ||| ||| ||
Sbjct 1045195 CTTACCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATGCCTTCCTTATCCTGAATCTT 1045254
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| || || | | || || | |||||||| |||||||| |||||||| ||
Sbjct 1045255 GCTCTTTACGTTATCAATGGTGTCAGAAGACTCAACTTCCAATGTAATGGTTTTACCAGT 1045314
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
||||||||| || || || |||||
Sbjct 1045315 CAAGGTTTTGACAAAAATTTGCAT 1045338
>seq3
Length=2452883
Score = 123 bits (136), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 7076 GCCCGTTCCCCAGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 7135
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| |||||||||||||||| |||||||||||
Sbjct 7136 ATCCATTCATGCGCGTCACTAGTTAGATGACGA 7168
Score = 123 bits (136), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 17946 GCCCGTTCCCCAGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 18005
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| |||||||||||||||| |||||||||||
Sbjct 18006 ATCCATTCATGCGCGTCACTAGTTAGATGACGA 18038
Score = 123 bits (136), Expect = 2e-23
Identities = 83/93 (89%), Gaps = 5/93 (5%)
Strand=Plus/Minus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2446178 GCCCGTTCCCCAGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 2446119
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| |||||||||||||||| |||||||||||
Sbjct 2446118 ATCCATTCATGCGCGTCACTAGTTAGATGACGA 2446086
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 9142 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTTCGCTATCGGTCTCTC 9201
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 9202 GCCAATATTTAGCTTTA 9218
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 20012 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTTCGCTATCGGTCTCTC 20071
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 20072 GCCAATATTTAGCTTTA 20088
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||| |
Sbjct 2444112 CTCTCTTTTCAAAGTTCTTTTCATCTTTCGATCACTCTACTTGTTCGCTATCGGTCTCTC 2444053
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 2444052 GCCAATATTTAGCTTTA 2444036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947183671324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |