Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007-
11-09] 4 sequences; 12,591,251 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1 298 7e-76
seq2 262 5e-65
>seq1
Length=5579133
Score = 298 bits (330), Expect = 7e-76
Identities = 1394/2194 (64%), Gaps = 37/2194 (2%)
Strand=Plus/Minus
Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939
||||| |||||||||||||| || || ||||| |||| || ||||| ||||||||
Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457
Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999
|| | ||| || ||||| | || || |||| | ||| |||||| |||
Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397
Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059
|| | || | ||| ||||| | |||| |||||||| ||| ||||| | |||
Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337
Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 62116
|| |||| ||||| |||| |||| | | | || || ||||||||| ||
Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277
Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176
| || | ||||| || || |||||||| || | | ||| | | | | |
Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217
Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236
|| ||||| || | ||| ||||| ||||| | || | || ||| || |||
Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157
Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296
||||| || || | | ||||||| || | ||||||| ||||| ||||| |||||
Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097
Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62356
||||| || || ||| ||| | || |||| | | || || || || | ||
Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037
Query 62357 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62416
|||| ||||||||| | || ||| |||| |||||| |||
Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981
Query 62417 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 62472
| | | |||||| |||| | || |||| || || || || | || |||
Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921
Query 62473 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTG-CGCT 62530
||||| | || ||| ||||| ||||||||||| | | ||||| | |||| | |
Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861
Query 62531 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACAC 62588
| ||| | | ||||| ||| ||||| || ||| || || || | ||||||||||
Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805
Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 62647
| | ||| | || | ||| | | |||| | | | |||||| |||| |||||||||
Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746
Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62707
|||| || ||||| || ||||| || | || || || || ||||| | || ||
Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686
Query 62708 AGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAA 62767
| |||| | || ||| | | ||| || ||| ||||| || || || ||||||
Sbjct 4228685 TGGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAA 4228626
Query 62768 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 62827
|| || || || | || | | |||| | |||||||| || || || ||
Sbjct 4228625 ACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGA 4228566
Query 62828 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 62887
|| || || | ||| | ||||| ||| ||| || | ||||||||| | |||||
Sbjct 4228565 ATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAA 4228506
Query 62888 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 62947
||| |||||||||||| || |||| | ||| || | ||| || | |||| ||
Sbjct 4228505 GGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA-- 4228448
Query 62948 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTC 63005
|| | | | | ||||| ||| ||| | | || | | |||||||| |
Sbjct 4228447 ATGAACGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCAC 4228388
Query 63006 CCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63065
||||||||| ||| || ||| |||| || || | || | ||| | ||| |
Sbjct 4228387 CCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTA- 4228329
Query 63066 CCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124
| |||| | |||| |||||| | ||||||||||| | || ||| | | || || ||
Sbjct 4228328 CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGTG 4228271
Query 63125 CTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182
| | |||||||| || | ||||| ||| || | || |||||| ||| | ||
Sbjct 4228270 CGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCAT 4228211
Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242
|||| || ||||| || || | | ||||| || || || ||||| || || | |
Sbjct 4228210 GCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACAT 4228151
Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302
| | ||| ||||| || ||||| | | ||| || | ||| || ||||| |||||||| |
Sbjct 4228150 AACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAG 4228091
Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63362
| || | ||||| || | || | ||| || ||| | ||| || || || |
Sbjct 4228090 TTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAG 4228031
Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422
| | || ||||| | || || || | || || ||||| || || ||| || |
Sbjct 4228030 CGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGT 4227971
Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63482
| |||| ||| || ||||| ||| | |||| ||||| ||| || ||||| || |
Sbjct 4227970 CTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAA 4227911
Query 63483 AGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63542
|| || ||||| || ||||| | || ||| | | |||||| || |||||||| |
Sbjct 4227910 GAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAG 4227851
Query 63543 AGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63601
|| || ||| || | || || || || ||||||||||| | ||| |||||||| |
Sbjct 4227850 CTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGC 4227792
Query 63602 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661
||| | | ||| || || ||| || || || || ||||| || || |||||
Sbjct 4227791 TCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAG 4227732
Query 63662 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTG 63721
| ||||| | || || || ||||| || ||| | | | || ||||| | |||
Sbjct 4227731 AAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTC 4227672
Query 63722 TTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTG 63781
| || | ||| | | | || || || || | | || | |||| |||||
Sbjct 4227671 ATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTT 4227612
Query 63782 ACATAGT--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTA 63839
||||||| |||| | | || || | ||| | || | |||| || || |
Sbjct 4227611 ACATAGTCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTATGCA 4227554
Query 63840 GATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 63899
|| || || || |||||||| || | ||| |||||||| ||||| | |||||| ||
Sbjct 4227553 AGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAG 4227494
Query 63900 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTC 63959
| || || |||| || || | | | |||||||| | || || ||||| ||| | |
Sbjct 4227493 TCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACAC 4227434
Query 63960 CTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAAC 64019
| || || || || |||| | ||||| | |||||| | | | ||||||||
Sbjct 4227433 CAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAAC 4227374
Query 64020 ATAATTTTCTAATACGAGATGTGATTTTATCAAA 64053
| | | || ||||| |||||||| |||||
Sbjct 4227373 AAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340
>seq2
Length=4539804
Score = 262 bits (290), Expect = 5e-65
Identities = 598/895 (67%), Gaps = 10/895 (1%)
Strand=Plus/Minus
Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414
|||||||| || ||||||| ||| || ||||| || ||||| ||||| |||
Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813
Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474
|||| || ||||| |||||||||||||| |||||||| || ||||| || | |
Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753
Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534
||||| || | ||| | ||| || |||||||| ||||| ||||| || |
Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693
Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594
||||| || | || |||| |||||||| | || | |||||| |||||| ||
Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633
Query 32595 GCGTCTGTTATAATAGATCTTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTAA 32652
|| || ||||| | | || || | | || ||| | | ||||| |||
Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
|||||||||| || || ||| ||| |||||||| || | || ||| ||||| |||||||
Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772
| || || || ||||| || ||||| || ||||||||||| || || ||||| |||||||
Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455
Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGC 32829
||||||| || |||||||| || |||||||||| | | | |||| || |
Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395
Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889
|||| ||||| ||||||| | ||| || || | | || |||||| |
Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335
Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949
|||||| || || | |||||| ||| || || |||||||||| ||||||
Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275
Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009
|| | || || ||||| |||||||| ||||| || || || | || | ||| |
Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215
Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069
| | ||||| ||||| | | || || || | ||| ||||| || || || ||
Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155
Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTT 33126
|| || ||| | || | |||| ||||| || ||| || | ||| |
Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095
Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186
||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| |
Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035
Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241
| ||||| || || | | ||| || || ||||| | ||||||||| | ||||||
Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631968318400
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