Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizosaccharomyces_20pombe_20[genbank_20GCA_5F000002945.2_202007- 11-09] 4 sequences; 12,591,251 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 298 7e-76 seq2 262 5e-65 >seq1 Length=5579133 Score = 298 bits (330), Expect = 7e-76 Identities = 1394/2194 (64%), Gaps = 37/2194 (2%) Strand=Plus/Minus Query 61880 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 61939 ||||| |||||||||||||| || || ||||| |||| || ||||| |||||||| Sbjct 4229516 GTACGAAGATAGTACATTCCAGTCTTAAGACCCTTCTTCCAGCCATAAAAGTGCATACTA 4229457 Query 61940 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 61999 || | ||| || ||||| | || || |||| | ||| |||||| ||| Sbjct 4229456 GTAATTTTTCCGTAGGAAGGATCCTTCAAGTGAATGTTCAAACTTTGGGATTGATCAATG 4229397 Query 62000 AAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTT 62059 || | || | ||| ||||| | |||| |||||||| ||| ||||| | ||| Sbjct 4229396 AATGGGCCACGGTCGGCAGCATAGTCAATAACAGTCTTTTGACTAATCTCCCATACGGTT 4229337 Query 62060 TTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGATCCACCATCT 62116 || |||| ||||| |||| |||| | | | || || ||||||||| || Sbjct 4229336 TTGTAAAGATCCTTAAGGTCTTGAGGAATTTCAGGAATCGCTTGGATGGATCCATCAAGC 4229277 Query 62117 GCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGG 62176 | || | ||||| || || |||||||| || | | ||| | | | | | Sbjct 4229276 ATAACAAGTTTGTTCTTCATGTCCTCATTCCACAAATCACGCTCAACGAGATCCTTCAAC 4229217 Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 || ||||| || | ||| ||||| ||||| | || | || ||| || ||| Sbjct 4229216 AGCCATGGATTGACAATTTGGAATTCACCAGAAAGAACACGGCGTTGGTACATGTTAGAA 4229157 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 ||||| || || | | ||||||| || | ||||||| ||||| ||||| ||||| Sbjct 4229156 GTATATGGCTCAAAACACTCATTGAAACCAAGGATTTGAGATGTTGAAGCAGTAGGCATT 4229097 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62356 ||||| || || ||| ||| | || |||| | | || || || || | || Sbjct 4229096 GGTGCTACTAACAAAGAATTACGAATTCCGTGTTTAGCAATCTTTTCCTTCAACTCGGCC 4229037 Query 62357 CAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTG 62416 |||| ||||||||| | || ||| |||| |||||| ||| Sbjct 4229036 CAATCCCAAAGATCGGTGGGATTAACGTTCCACATGTCATACTGTAAAATACC----CTG 4228981 Query 62417 GCGTAC----GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACT 62472 | | | |||||| |||| | || |||| || || || || | || ||| Sbjct 4228980 GGATGCAGGAGATCCTTCATAACTCTCATATGTACCCTCTACCTGGGCAATCTCGCAAGA 4228921 Query 62473 CGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTG-CGCT 62530 ||||| | || ||| ||||| ||||||||||| | | ||||| | |||| | | Sbjct 4228920 GGCCTCAAGGGCTGCGTGGTAAATTGTTTCGAAGATTTGGATGTTTAGCTTCTTGGCACC 4228861 Query 62531 TCCAGGCTATCAAATGGATAATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACAC 62588 | ||| | | ||||| ||| ||||| || ||| || || || | |||||||||| Sbjct 4228860 TGCAGATT--CGAATGG-TAAACGAAGAGCGAAGAAA-GCATCGGCAAGACCTTGAACAC 4228805 Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAA 62647 | | ||| | || | ||| | | |||| | | | |||||| |||| ||||||||| Sbjct 4228804 CCAAACCAACGGGACGATGGCGCATATT-GCTACGGCGAGCTTCAGGAACAGGATAATAG 4228746 Query 62648 TTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTG 62707 |||| || ||||| || ||||| || | || || || || ||||| | || || Sbjct 4228745 TTAACGTCGATAATCTTGTTGAGGTTACGAGTAACGACCTTCACGACATCGTGAAGCTTT 4228686 Query 62708 AGAAAATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAA 62767 | |||| | || ||| | | ||| || ||| ||||| || || || |||||| Sbjct 4228685 TGGAAATTGTACTTTCCGTCTTTAATAAATGTGGGCAAAGCAACTGAAGCAAGGTTACAA 4228626 Query 62768 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 62827 || || || || | || | | |||| | |||||||| || || || || Sbjct 4228625 ACAGCAACTTCGTCAGGAGAAGAGTATTCAACAATCTCAGTACACAGGTTTGAGCAGCGA 4228566 Query 62828 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 62887 || || || | ||| | ||||| ||| ||| || | ||||||||| | ||||| Sbjct 4228565 ATAGTACCAACATTCTTCTGATTGGACTTACGGTTGCATGAATCCTTATACAACATGAAA 4228506 Query 62888 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATT 62947 ||| |||||||||||| || |||| | ||| || | ||| || | |||| || Sbjct 4228505 GGATTACCAGTTTCAACTTGTGATTGAAGAATGGCGTACCAAACTTTTTGAGCAGGTA-- 4228448 Query 62948 ATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTA--TACAATCGTTCGAACTCGTCTC 63005 || | | | | ||||| ||| ||| | | || | | |||||||| | Sbjct 4228447 ATGAACGACGACCACGGTTCTCCTTCTCATACTTTTCGTAGAGGGCAACAAACTCGTCAC 4228388 Query 63006 CCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63065 ||||||||| ||| || ||| |||| || || | || | ||| | ||| | Sbjct 4228387 CCCAAACATCTGCCAAACCTGGAGCCTCATTGGGGCAGAAGAAGGTCCATTGCTCGTTA- 4228329 Query 63066 CCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124 | |||| | |||| |||||| | ||||||||||| | || ||| | | || || || Sbjct 4228328 CGTTCAACACGTTGCATAAACAAGTCAGGAATCCACAAGGC-ATAGA-ACATTTCGCGTG 4228271 Query 63125 CTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63182 | | |||||||| || | ||||| ||| || | || |||||| ||| | || Sbjct 4228270 CGCGGAAATCCTCGTTGCCATGAGTCTTTCGAAGTTCTAAAAAGTCCATAACATCGGCAT 4228211 Query 63183 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63242 |||| || ||||| || || | | ||||| || || || ||||| || || | | Sbjct 4228210 GCCAAGGCTCCAAATAGGCTGCAAAGGCACCAGGACGCTTATTACCTCCTTGGTCAACAT 4228151 Query 63243 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 63302 | | ||| ||||| || ||||| | | ||| || | ||| || ||||| |||||||| | Sbjct 4228150 AACGAGCTGTGTTGTTGTAAACACGAATCATGGGGACAATTCCGTTGGAAGTACCATTAG 4228091 Query 63303 TCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63362 | || | ||||| || | || | ||| || ||| | ||| || || || | Sbjct 4228090 TTCCAGCAATATACGAACCGGTTGCTCTAATGTTGTGAATATTAATACCAATACCGCCAG 4228031 Query 63363 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 63422 | | || ||||| | || || || | || || ||||| || || ||| || | Sbjct 4228030 CGGTCTTGGAGATCATAGCACACATCTTGAGTGTGTCGTAGATTCCTTCAATAGAGTCGT 4227971 Query 63423 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63482 | |||| ||| || ||||| ||| | |||| ||||| ||| || ||||| || | Sbjct 4227970 CTTTCATCGTAACGAGGAAACAAGAAGAGAGTTGGGGACGAGGAGTACCGGCATTGAAAA 4227911 Query 63483 AGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63542 || || ||||| || ||||| | || ||| | | |||||| || |||||||| | Sbjct 4227910 GAGTTGGTGAAGCATGGGTAAAGTAGCGTTGAGACATCAAATTGTATGTTTCAATAGCAG 4227851 Query 63543 AGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63601 || || ||| || | || || || || ||||||||||| | ||| |||||||| | Sbjct 4227850 CTTCAATGTCCTCACCG-TGGATACCAACGGCGACACGCATAATCATATGCTGAGGGCGC 4227792 Query 63602 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 ||| | | ||| || || ||| || || || || ||||| || || ||||| Sbjct 4227791 TCAGCAACTTTGCCGTCGATACGCAATAAATAAGAACGCTCTAAAGTCTTGAAGCCAAAG 4227732 Query 63662 TAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTG 63721 | ||||| | || || || ||||| || ||| | | | || ||||| | ||| Sbjct 4227731 AAATTGTAAGTGAAATCACGATCGTATATGATAGCACTATCTAATTCGTCCTTGTGTTTC 4227672 Query 63722 TTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTG 63781 | || | ||| | | | || || || || | | || | |||| ||||| Sbjct 4227671 ATTACGATATCGTAGATTTTGTCAGAGATCATGGGGGCAGGCTTGTCTGTTTTGGGATTT 4227612 Query 63782 ACATAGT--TGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTA 63839 ||||||| |||| | | || || | ||| | || | |||| || || | Sbjct 4227611 ACATAGTCATGAAGCTGTTGAACGACAGTTGA--AAACACCTTCTCGGTTTGCTTATGCA 4227554 Query 63840 GATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG 63899 || || || || |||||||| || | ||| |||||||| ||||| | |||||| || Sbjct 4227553 AGTTGGAAACAGCAATTCTAGCAGCCAAAATAGCATAATCAGGATGCTTTGTAGTCATAG 4227494 Query 63900 TGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTC 63959 | || || |||| || || | | | |||||||| | || || ||||| ||| | | Sbjct 4227493 TCGCGGCAGTTTCAGCAGCTAAATTATCCAATTCAATAGTGGTAACACCGGGATACACAC 4227434 Query 63960 CTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAAC 64019 | || || || || |||| | ||||| | |||||| | | | |||||||| Sbjct 4227433 CAGAAATGACTTTTTGAGTGATTTCGACGGGATCAACATGATCGGAATCAAGGCCATAAC 4227374 Query 64020 ATAATTTTCTAATACGAGATGTGATTTTATCAAA 64053 | | | || ||||| |||||||| ||||| Sbjct 4227373 AAAGCCTCGAAACACGAGCAGTGATTTTGTCAAA 4227340 >seq2 Length=4539804 Score = 262 bits (290), Expect = 5e-65 Identities = 598/895 (67%), Gaps = 10/895 (1%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 |||||||| || ||||||| ||| || ||||| || ||||| ||||| ||| Sbjct 3722872 GACATAACGCCAGCAATTTGGTAGTCAGAAACTTTCTTTTCAAAGAAATTTGTTTTTCCT 3722813 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||| || ||||| |||||||||||||| |||||||| || ||||| || | | Sbjct 3722812 GCTAAAGAGATATTCTCCATGAAATCGAAAGGATTGGTTACGTTATAGTACTTGTCATTG 3722753 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||||| || | ||| | ||| || |||||||| ||||| ||||| || | Sbjct 3722752 CCCAAAGCAACCAACAAACGATCAGCAACAAATTCAATATACTGACACATCAAATCCTTA 3722693 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || | || |||| |||||||| | || | |||||| |||||| || Sbjct 3722692 TTCATACCAAGCAGACTAACGGGAAGAGCGTCCGTGAAGTATTCTTTCTCAATATCAACA 3722633 Query 32595 GCGTCTGTTATAATAGATCTTACTG--TTTCTTCACTCGGTGGATACAATAAATGTTTAA 32652 || || ||||| | | || || | | || ||| | | ||||| ||| Sbjct 3722632 GCTTCAACAATAATGGCTTCAACAACCTTGCGGC-CT-GGTCTGTGCTTCAAATGACTAA 3722575 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||||||| || || ||| ||| |||||||| || | || ||| ||||| ||||||| Sbjct 3722574 ACATCAAACAGGCAAAGTCGGTGTGAAGACCCTCATCACGACAAATCAATTCATTGGAAA 3722515 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || || || ||||| || ||||| || ||||||||||| || || ||||| ||||||| Sbjct 3722514 AAGTAAGACCAGGCATAAGTCCACGTTTCTTAAGCCAAAAAATAGAGGCAAACGATCCAG 3722455 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGC 32829 ||||||| || |||||||| || |||||||||| | | | |||| || | Sbjct 3722454 AAAAGAAGATACCTTCTACAGCAGCAAAGGCAACCAAACGAATTGCATAGGTGGAATCTT 3722395 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 |||| ||||| ||||||| | ||| || || | | || |||||| | Sbjct 3722394 CATCATTAATCCAACGAAGAGCCCACTTGGCTTTGGCCTTAATAGAACCCATTGTTAAAA 3722335 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 |||||| || || | |||||| ||| || || |||||||||| |||||| Sbjct 3722334 TAGCATCGAAATGACGCTGTTTTTCCTTAGGTTCACGAATGTATGTATCAAGCAAAAGTG 3722275 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 || | || || ||||| |||||||| ||||| || || || | || | ||| | Sbjct 3722274 AGTAGGTCTCAGAGTGAATATTTTCAATCATAATTTGGAAACCATAAACACAACGAGCTT 3722215 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | | ||||| ||||| | | || || || | ||| ||||| || || || || Sbjct 3722214 CAGGGATCTGAACTTCAGAGCTGAAACGCTCGAGAAGATTCTCATTAACAATACCATCTG 3722155 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTT 33126 || || ||| | || | |||| ||||| || ||| || | ||| | Sbjct 3722154 ACGCAGCGAAATAGGCGAGTACAGTGGAAATAAAGTAACGTTCATCAGCATTTAACTTGT 3722095 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 ||| ||||||| | ||||| || | ||| | ||| || | |||||||| ||||| | Sbjct 3722094 TATCCCAATCAACCAAGTCTTTCGAAAGATCAATTTCCTCAGCAGTCCAAAAAGATGCTT 3722035 Query 33187 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | ||||| || || | | ||| || || ||||| | ||||||||| | |||||| Sbjct 3722034 CAGCCTTCTTGTAGAATTGCCAAATTTCGTGATACTTAATTGGAAACAAAACAAA 3721980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631968318400